Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:137309099..137314515-chr7:137316630..137319119,5	K562	blood:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10275097	0.87[ASN][1000 genomes]
rs11971016	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11971088	0.87[ASN][1000 genomes]
rs28787723	0.87[ASN][1000 genomes]
rs3778784	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs3778786	0.87[ASN][1000 genomes]
rs3778787	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs3778789	0.87[ASN][1000 genomes]
rs3800615	0.87[ASN][1000 genomes]
rs58245080	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs59626548	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs59811187	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6467712	0.87[ASN][1000 genomes]
rs6947756	0.87[ASN][1000 genomes]
rs6979919	0.87[ASN][1000 genomes]
rs73455308	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73455324	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73461023	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73461041	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73461053	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73461054	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73461063	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7788632	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869820	chr7:136990386-137347718	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	esv1812888	chr7:137283212-137366467	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137277200-137326800	Weak transcription	Osteobl	bone
2	chr7:137282800-137337400	Weak transcription	HSMMtube	muscle
3	chr7:137294000-137328400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr7:137297600-137324200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr7:137304600-137319200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr7:137304800-137320000	Weak transcription	Aorta	Aorta
7	chr7:137313200-137328400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr7:137313600-137321800	Weak transcription	Brain Germinal Matrix	brain

Quick Search: