Variant report
| Variant | rs58523545 |
|---|---|
| Chromosome Location | chr8:64202380-64202381 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:64196257..64198143-chr8:64201420..64203786,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs4270960 | 1.00[EUR][1000 genomes] |
| rs57317205 | 1.00[EUR][1000 genomes] |
| rs58136897 | 1.00[EUR][1000 genomes] |
| rs58347983 | 1.00[EUR][1000 genomes] |
| rs60595425 | 1.00[EUR][1000 genomes] |
| rs61143666 | 1.00[EUR][1000 genomes] |
| rs61144659 | 1.00[EUR][1000 genomes] |
| rs6472082 | 1.00[EUR][1000 genomes] |
| rs6981955 | 1.00[EUR][1000 genomes] |
| rs7000002 | 1.00[EUR][1000 genomes] |
| rs7014890 | 1.00[EUR][1000 genomes] |
| rs73254921 | 1.00[EUR][1000 genomes] |
| rs73254933 | 1.00[EUR][1000 genomes] |
| rs73254954 | 1.00[EUR][1000 genomes] |
| rs73256855 | 1.00[EUR][1000 genomes] |
| rs73272416 | 1.00[EUR][1000 genomes] |
| rs7833923 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831342 | chr8:64084331-64294941 | Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv890967 | chr8:64107847-64454446 | Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 3 | nsv890968 | chr8:64198880-64227872 | Weak transcription Enhancers Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:64202200-64211200 | Weak transcription | Brain Germinal Matrix | brain |
