Variant report

Variant	rs58524744
Chromosome Location	chr13:51639179-51639180
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr13:51639167-51639363	MCF10A-Er-Src	breast:	n/a	n/a
2	USF1	chr13:51638836-51639189	HepG2	liver:	n/a	chr13:51638966-51638977

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51637970..51639747-chr13:51643912..51646146,3	MCF-7	breast:

Variant related genes	Relation type
GUCY1B2	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs58852713	1.00[AMR][1000 genomes]
rs73483736	1.00[AMR][1000 genomes]
rs73483792	1.00[AMR][1000 genomes]
rs73483797	1.00[AMR][1000 genomes]
rs73483802	1.00[AMR][1000 genomes]
rs73485814	1.00[AMR][1000 genomes]
rs73497575	1.00[AMR][1000 genomes]
rs73497601	1.00[AMR][1000 genomes]
rs73501621	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832610	chr13:51636661-51822106	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51632600-51639800	Enhancers	Brain Germinal Matrix	brain
2	chr13:51632800-51639200	Weak transcription	Spleen	Spleen
3	chr13:51633200-51639400	Weak transcription	Fetal Muscle Leg	muscle
4	chr13:51633200-51639800	Weak transcription	Fetal Stomach	stomach
5	chr13:51633200-51641000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr13:51633400-51657800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr13:51633800-51640000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr13:51633800-51640800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr13:51634400-51640800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr13:51636200-51640000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr13:51636800-51639800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr13:51637000-51641600	Enhancers	Primary hematopoietic stem cells	blood
13	chr13:51637600-51639600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr13:51637800-51639200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr13:51638000-51640800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr13:51638000-51644600	Enhancers	Fetal Brain Male	brain
17	chr13:51638200-51639600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr13:51638400-51640000	Weak transcription	Lung	lung
19	chr13:51638400-51640600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr13:51638800-51639800	Enhancers	HepG2	liver
21	chr13:51638800-51640800	Enhancers	Fetal Brain Female	brain
22	chr13:51638800-51641000	Enhancers	Fetal Lung	lung
23	chr13:51639000-51639200	Enhancers	Fetal Kidney	kidney

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