Variant report

Variant	rs58527692
Chromosome Location	chr7:104500986-104500987
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2240456	1.00[EUR][1000 genomes]
rs2430481	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3735378	1.00[EUR][1000 genomes]
rs56300169	1.00[EUR][1000 genomes]
rs59242356	1.00[EUR][1000 genomes]
rs59263503	1.00[EUR][1000 genomes]
rs61383544	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831086	chr7:104422503-104596766	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104476400-104503000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr7:104481600-104514400	Weak transcription	Fetal Kidney	kidney
3	chr7:104494000-104502800	Weak transcription	Fetal Intestine Large	intestine
4	chr7:104499400-104501400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr7:104499400-104501600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr7:104499400-104501600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr7:104499400-104501800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr7:104499400-104502000	Weak transcription	Primary T cells from cord blood	blood
9	chr7:104499400-104502200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr7:104499400-104502200	Weak transcription	GM12878-XiMat	blood
11	chr7:104500400-104501000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr7:104500400-104501200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr7:104500800-104501000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr7:104500800-104501600	Weak transcription	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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