Variant report

Variant	rs58534283
Chromosome Location	chr7:147609588-147609589
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10232583	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10234247	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10248203	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10249353	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10252322	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10255352	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10261418	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10261560	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10263426	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10270982	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10281336	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17170708	1.00[EUR][1000 genomes]
rs17170710	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17170712	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17170713	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17170715	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17170722	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17170724	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17170726	1.00[EUR][1000 genomes]
rs17170728	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28371890	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28407458	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28517705	1.00[AMR][1000 genomes]
rs60522775	1.00[EUR][1000 genomes]
rs6947415	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023913	chr7:147521075-147806318	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1026058	chr7:147521109-147783042	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv539179	chr7:147521109-147783042	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv934002	chr7:147521110-147807705	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1017610	chr7:147523752-147806427	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147606600-147610200	Enhancers	Adipose Nuclei	Adipose
2	chr7:147607000-147612400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:147607200-147612200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr7:147607200-147612600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr7:147608200-147609800	Enhancers	Primary hematopoietic stem cells	blood
6	chr7:147608200-147609800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr7:147608200-147609800	Enhancers	Fetal Lung	lung
8	chr7:147608200-147610000	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr7:147608200-147610000	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr7:147608200-147610000	Enhancers	Brain Substantia Nigra	brain
11	chr7:147608400-147609600	Enhancers	Psoas Muscle	Psoas
12	chr7:147608600-147612200	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr7:147608600-147612400	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr7:147608800-147609600	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr7:147609000-147611000	Enhancers	Fetal Muscle Leg	muscle
16	chr7:147609000-147612200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr7:147609200-147609600	Enhancers	Colonic Mucosa	Colon
18	chr7:147609200-147609600	Enhancers	Fetal Muscle Trunk	muscle
19	chr7:147609200-147609600	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr7:147609200-147610000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr7:147609200-147611000	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr7:147609400-147609600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr7:147609400-147609800	Enhancers	Fetal Heart	heart
24	chr7:147609400-147609800	Bivalent Enhancer	Placenta	Placenta
25	chr7:147609400-147610000	Enhancers	Fetal Stomach	stomach
26	chr7:147609400-147611000	Enhancers	Rectal Mucosa Donor 29	rectum

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