Variant report

Variant	rs58563012
Chromosome Location	chr3:143359689-143359690
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10513214	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10935499	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11916000	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16853964	0.93[ASN][1000 genomes]
rs57671316	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58758962	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60700545	0.81[ASN][1000 genomes]
rs73152850	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73152852	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv829745	chr3:143278512-143405626	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143328200-143376200	Weak transcription	Ovary	ovary
2	chr3:143346400-143363200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:143351600-143369800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr3:143354200-143373600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr3:143354200-143374000	Weak transcription	Esophagus	oesophagus
6	chr3:143356800-143359800	Weak transcription	Fetal Lung	lung
7	chr3:143357800-143369000	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr3:143358000-143362400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr3:143358200-143369000	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr3:143358400-143360000	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr3:143358400-143371200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr3:143358600-143361800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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