Variant report

Variant	rs58564664
Chromosome Location	chr8:54831349-54831350
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10504159	0.95[ASN][1000 genomes]
rs16919683	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16919694	0.87[ASN][1000 genomes]
rs1905359	0.95[ASN][1000 genomes]
rs56788440	0.95[ASN][1000 genomes]
rs57122000	0.95[ASN][1000 genomes]
rs57381301	1.00[ASN][1000 genomes]
rs58070188	1.00[ASN][1000 genomes]
rs58603618	1.00[ASN][1000 genomes]
rs59371117	1.00[ASN][1000 genomes]
rs59537268	1.00[ASN][1000 genomes]
rs60060985	1.00[ASN][1000 genomes]
rs60067061	1.00[ASN][1000 genomes]
rs73589234	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73680373	1.00[ASN][1000 genomes]
rs73680374	1.00[ASN][1000 genomes]
rs7825816	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023983	chr8:54790309-55145770	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv539623	chr8:54790309-55145770	Bivalent Enhancer Genic enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:54818600-54843600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:54825000-54833000	Weak transcription	A549	lung
3	chr8:54828000-54843600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr8:54828400-54842800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr8:54829200-54843400	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr8:54830400-54831400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr8:54830400-54831400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr8:54830600-54837200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr8:54830800-54843400	Weak transcription	HMEC	breast
10	chr8:54830800-54844200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr8:54831000-54840000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr8:54831000-54842400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr8:54831000-54843200	Weak transcription	NHEK	skin
14	chr8:54831200-54837400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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