Variant report

Variant	rs58585757
Chromosome Location	chr14:70064337-70064338
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10747300	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2877576	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899302	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899306	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902735	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902736	1.00[EUR][1000 genomes]
rs6573895	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7142060	0.93[EUR][1000 genomes]
rs8015482	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049280	chr14:70036804-70172630	Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv542124	chr14:70036804-70172630	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70043800-70067200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:70060400-70076600	Weak transcription	Brain Angular Gyrus	brain
3	chr14:70060800-70076800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr14:70062200-70067000	Weak transcription	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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