Variant report

Variant	rs58589293
Chromosome Location	chr8:10924430-10924431
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AF131215.6.1-1	chr8:10924360-10924599	ENSG00000254839.1

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10089039	1.00[AMR][1000 genomes]
rs10097295	1.00[AMR][1000 genomes]
rs57068380	1.00[AMR][1000 genomes]
rs57844839	1.00[AMR][1000 genomes]
rs58292393	1.00[AMR][1000 genomes]
rs58478925	1.00[AMR][1000 genomes]
rs58518000	1.00[AMR][1000 genomes]
rs58861459	1.00[AMR][1000 genomes]
rs59547174	1.00[AMR][1000 genomes]
rs60670109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61110938	1.00[AMR][1000 genomes]
rs6601558	1.00[AMR][1000 genomes]
rs7845397	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10917000-10926000	Weak transcription	Gastric	stomach
2	chr8:10918000-10925000	Weak transcription	Brain Anterior Caudate	brain
3	chr8:10922000-10929600	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr8:10922800-10924600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
5	chr8:10922800-10924600	Flanking Active TSS	HSMMtube	muscle
6	chr8:10922800-10926200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr8:10922800-10926200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr8:10923000-10925000	Enhancers	Fetal Heart	heart
9	chr8:10923200-10925000	Flanking Active TSS	HSMM	muscle
10	chr8:10923400-10925000	Enhancers	Right Atrium	heart
11	chr8:10923600-10924600	Bivalent Enhancer	Fetal Thymus	thymus
12	chr8:10923600-10925600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr8:10923600-10925600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
14	chr8:10923600-10926000	Enhancers	Brain Angular Gyrus	brain
15	chr8:10923800-10924600	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr8:10923800-10924600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
17	chr8:10923800-10925000	Bivalent Enhancer	Left Ventricle	heart
18	chr8:10923800-10925400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr8:10923800-10925400	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr8:10923800-10927800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr8:10924000-10924600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr8:10924000-10925000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr8:10924000-10925000	Bivalent Enhancer	Fetal Muscle Leg	muscle
24	chr8:10924200-10924600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr8:10924200-10924600	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
26	chr8:10924200-10924600	Bivalent Enhancer	Hela-S3	cervix
27	chr8:10924200-10924800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
28	chr8:10924200-10924800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr8:10924200-10925000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr8:10924200-10925000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
31	chr8:10924200-10925000	Bivalent/Poised TSS	A549	lung
32	chr8:10924200-10925000	Flanking Active TSS	NH-A	brain
33	chr8:10924200-10925000	Enhancers	NHLF	lung
34	chr8:10924200-10925000	Flanking Active TSS	Osteobl	bone
35	chr8:10924200-10925400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr8:10924200-10925600	Enhancers	ES-I3 Cell Line	embryonic stem cell
37	chr8:10924200-10925600	Enhancers	HMEC	breast
38	chr8:10924200-10925800	Enhancers	H1 Cell Line	embryonic stem cell
39	chr8:10924200-10925800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr8:10924200-10926400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
41	chr8:10924400-10924600	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr8:10924400-10924600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr8:10924400-10924600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
44	chr8:10924400-10924600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
45	chr8:10924400-10924600	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
46	chr8:10924400-10924800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr8:10924400-10924800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr8:10924400-10924800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr8:10924400-10924800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr8:10924400-10924800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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