Variant report

Variant	rs58592465
Chromosome Location	chr13:67795700-67795701
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1114473	1.00[EUR][1000 genomes]
rs17082065	1.00[EUR][1000 genomes]
rs17082089	1.00[EUR][1000 genomes]
rs17082112	1.00[EUR][1000 genomes]
rs17082157	1.00[EUR][1000 genomes]
rs17082160	1.00[EUR][1000 genomes]
rs17082164	1.00[EUR][1000 genomes]
rs17082175	1.00[EUR][1000 genomes]
rs17082230	1.00[EUR][1000 genomes]
rs17082259	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17082262	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57566819	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58767113	1.00[EUR][1000 genomes]
rs7321140	1.00[EUR][1000 genomes]
rs73511496	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67756200-67795800	Weak transcription	Left Ventricle	heart
2	chr13:67772200-67797200	Weak transcription	Fetal Kidney	kidney
3	chr13:67790800-67795800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr13:67791400-67795800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:67792200-67797200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr13:67792400-67795800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr13:67792800-67795800	Weak transcription	Fetal Heart	heart
8	chr13:67793600-67795800	Weak transcription	Fetal Brain Male	brain
9	chr13:67793800-67795800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr13:67793800-67795800	Weak transcription	HSMM	muscle
11	chr13:67794400-67795800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr13:67794600-67795800	Enhancers	Brain Hippocampus Middle	brain
13	chr13:67794600-67800000	Active TSS	Fetal Brain Female	brain
14	chr13:67794800-67795800	Enhancers	Brain Cingulate Gyrus	brain
15	chr13:67795000-67795800	Active TSS	Brain Inferior Temporal Lobe	brain
16	chr13:67795000-67798200	Enhancers	Dnd41	blood
17	chr13:67795200-67795800	Enhancers	Muscle Satellite Cultured Cells	--
18	chr13:67795200-67796200	Enhancers	Primary B cells from peripheral blood	blood
19	chr13:67795200-67797000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr13:67795400-67795800	Enhancers	Primary B cells from cord blood	blood
21	chr13:67795400-67795800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr13:67795400-67795800	Active TSS	Brain Angular Gyrus	brain
23	chr13:67795400-67805600	Active TSS	Brain Substantia Nigra	brain
24	chr13:67795600-67795800	Enhancers	NHDF-Ad	bronchial
25	chr13:67795600-67796000	Enhancers	Primary T cells from cord blood	blood
26	chr13:67795600-67796000	Enhancers	Brain Germinal Matrix	brain
27	chr13:67795600-67796200	Enhancers	Adipose Nuclei	Adipose
28	chr13:67795600-67796200	Flanking Active TSS	Brain Anterior Caudate	brain
29	chr13:67795600-67796200	Flanking Active TSS	A549	lung
30	chr13:67795600-67796400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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