Variant report

Variant	rs58599361
Chromosome Location	chr11:59667553-59667554
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs56807325	0.83[AMR][1000 genomes]
rs57018855	1.00[ASN][1000 genomes]
rs59180193	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs59287057	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61678206	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7120906	1.00[ASN][1000 genomes]
rs713136	1.00[ASN][1000 genomes]
rs73490907	0.83[AMR][1000 genomes]
rs73490959	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73490967	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73490968	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv334	chr11:59663800-59709104	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1045477	chr11:59664372-59714143	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59660000-59668800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr11:59662800-59668200	Weak transcription	NHEK	skin
3	chr11:59662800-59668400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:59666200-59669800	Weak transcription	Spleen	Spleen
5	chr11:59666400-59668800	Weak transcription	K562	blood
6	chr11:59666800-59667600	Enhancers	HUVEC	blood vessel
7	chr11:59667000-59669400	Enhancers	Fetal Brain Female	brain
8	chr11:59667200-59668400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr11:59667200-59668400	Weak transcription	Hela-S3	cervix
10	chr11:59667400-59668200	Weak transcription	NH-A	brain
11	chr11:59667400-59669000	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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