Variant report

Variant	rs58613497
Chromosome Location	chr6:13101540-13101541
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:13100476..13102062-chr6:13103818..13105846,2	MCF-7	breast:
2	chr6:13100023..13102604-chr6:13117122..13119875,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11970697	1.00[ASN][1000 genomes]
rs58469352	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6903869	1.00[ASN][1000 genomes]
rs6910939	1.00[ASN][1000 genomes]
rs73368123	1.00[ASN][1000 genomes]
rs73368142	1.00[ASN][1000 genomes]
rs73368147	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73368149	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73368163	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73368165	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73368168	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73368172	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73368175	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73368177	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73368182	1.00[ASN][1000 genomes]
rs73368194	1.00[ASN][1000 genomes]
rs73368196	1.00[ASN][1000 genomes]
rs73368197	1.00[ASN][1000 genomes]
rs73369823	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9473446	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv817350	chr6:12922859-13137655	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13080000-13102000	Weak transcription	Fetal Brain Female	brain
2	chr6:13080000-13105200	Weak transcription	Right Atrium	heart
3	chr6:13089000-13102000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr6:13096200-13101800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr6:13096200-13103200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:13096400-13102200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr6:13097200-13106600	Weak transcription	Primary hematopoietic stem cells	blood
8	chr6:13098000-13102000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr6:13098600-13102000	Weak transcription	Brain Substantia Nigra	brain
10	chr6:13099200-13114200	Weak transcription	Aorta	Aorta
11	chr6:13099800-13102200	Weak transcription	Brain Angular Gyrus	brain
12	chr6:13099800-13103000	Weak transcription	Fetal Heart	heart
13	chr6:13099800-13105800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr6:13099800-13105800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:13099800-13105800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr6:13101000-13102600	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr6:13101400-13101800	Enhancers	Lung	lung
18	chr6:13101400-13102200	Enhancers	Left Ventricle	heart
19	chr6:13101400-13102200	Enhancers	Pancreas	Pancrea
20	chr6:13101400-13102400	Enhancers	Right Ventricle	heart
21	chr6:13101400-13102600	Enhancers	Brain Cingulate Gyrus	brain
22	chr6:13101400-13103600	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr6:13101400-13103600	Enhancers	Brain Anterior Caudate	brain

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