Variant report

Variant	rs58616406
Chromosome Location	chr1:215649938-215649939
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:215649830..215650771-chr1:215662339..215662875,2	MCF-7	breast:
2	chr1:215649219..215651138-chr1:215654320..215656307,2	MCF-7	breast:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs12740635	1.00[AFR][1000 genomes]
rs56728838	1.00[AFR][1000 genomes]
rs56849908	1.00[AFR][1000 genomes]
rs57179404	1.00[AFR][1000 genomes]
rs57420199	1.00[AFR][1000 genomes]
rs57432920	1.00[AFR][1000 genomes]
rs57772200	1.00[AFR][1000 genomes]
rs57782276	1.00[AFR][1000 genomes]
rs58393812	1.00[AFR][1000 genomes]
rs58760828	1.00[AFR][1000 genomes]
rs58896701	1.00[AFR][1000 genomes]
rs59762493	1.00[AFR][1000 genomes]
rs60134994	1.00[AFR][1000 genomes]
rs60365921	1.00[AFR][1000 genomes]
rs60987968	1.00[AFR][1000 genomes]
rs61080723	1.00[AFR][1000 genomes]
rs61490597	1.00[AFR][1000 genomes]
rs61568482	1.00[AFR][1000 genomes]
rs73081431	1.00[AFR][1000 genomes]
rs73081436	1.00[AFR][1000 genomes]
rs73081438	1.00[AFR][1000 genomes]
rs73081440	1.00[AFR][1000 genomes]
rs73081445	1.00[AFR][1000 genomes]
rs73081450	1.00[AFR][1000 genomes]
rs73081451	1.00[AFR][1000 genomes]
rs73081453	1.00[AFR][1000 genomes]
rs73081455	1.00[AFR][1000 genomes]
rs73081459	1.00[AFR][1000 genomes]
rs73081462	1.00[AFR][1000 genomes]
rs73081464	1.00[AFR][1000 genomes]
rs73081465	1.00[AFR][1000 genomes]
rs73081466	1.00[AFR][1000 genomes]
rs73081469	1.00[AFR][1000 genomes]
rs73081470	1.00[AFR][1000 genomes]
rs73081472	1.00[AFR][1000 genomes]
rs73081474	1.00[AFR][1000 genomes]
rs73081477	1.00[AFR][1000 genomes]
rs73081479	1.00[AFR][1000 genomes]
rs73081482	1.00[AFR][1000 genomes]
rs73081485	1.00[AFR][1000 genomes]
rs73081486	1.00[AFR][1000 genomes]
rs73081487	1.00[AFR][1000 genomes]
rs73081489	1.00[AFR][1000 genomes]
rs73081490	1.00[AFR][1000 genomes]
rs73081491	1.00[AFR][1000 genomes]
rs73081499	1.00[AFR][1000 genomes]
rs73081501	1.00[AFR][1000 genomes]
rs73083404	1.00[AFR][1000 genomes]
rs73083406	1.00[AFR][1000 genomes]
rs73083409	1.00[AFR][1000 genomes]
rs73083410	0.90[AFR][1000 genomes]
rs73083413	1.00[AFR][1000 genomes]
rs73100128	1.00[AFR][1000 genomes]
rs73100141	1.00[AFR][1000 genomes]
rs73100142	1.00[AFR][1000 genomes]
rs73100147	1.00[AFR][1000 genomes]
rs73100151	1.00[AFR][1000 genomes]
rs73100153	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832537	chr1:215509026-215705105	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv1796390	chr1:215561548-215799074	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1014266	chr1:215573051-215730838	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv947159	chr1:215645387-215673199	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv430324	chr1:215649163-216082605	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215646800-215650000	Enhancers	Placenta Amnion	Placenta Amnion
2	chr1:215647000-215650400	Enhancers	HSMM	muscle
3	chr1:215647200-215650000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:215647600-215650200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr1:215647800-215651000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr1:215648200-215650000	Enhancers	NHLF	lung
7	chr1:215648200-215650200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr1:215648400-215650000	Enhancers	NH-A	brain
9	chr1:215648400-215650200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr1:215648400-215650400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr1:215648400-215650400	Enhancers	HMEC	breast
12	chr1:215648400-215650400	Enhancers	NHEK	skin
13	chr1:215648400-215650600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr1:215648600-215650000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr1:215648800-215650600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr1:215648800-215663200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr1:215649200-215651200	Enhancers	HSMMtube	muscle
18	chr1:215649400-215650000	Flanking Active TSS	NHDF-Ad	bronchial
19	chr1:215649600-215650200	Enhancers	Osteobl	bone
20	chr1:215649800-215650000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr1:215649800-215650200	Enhancers	Muscle Satellite Cultured Cells	--

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