Variant report

Variant	rs58671143
Chromosome Location	chr6:80519575-80519576
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16890918	1.00[AMR][1000 genomes]
rs16890942	1.00[AMR][1000 genomes]
rs16891157	1.00[AMR][1000 genomes]
rs16891161	1.00[AMR][1000 genomes]
rs16891207	1.00[AMR][1000 genomes]
rs239525	1.00[AMR][1000 genomes]
rs58544915	1.00[AMR][1000 genomes]
rs60835901	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028607	chr6:79853272-80767716	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1032347	chr6:80284809-80694778	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1021143	chr6:80400195-80598163	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80517800-80520000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:80518000-80520000	Enhancers	Fetal Brain Female	brain
3	chr6:80518400-80521400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:80518600-80521000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr6:80518800-80519800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr6:80518800-80519800	Weak transcription	Fetal Brain Male	brain
7	chr6:80518800-80520800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:80518800-80521200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr6:80518800-80521400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:80519000-80520000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:80519000-80520000	Weak transcription	Stomach Smooth Muscle	stomach
12	chr6:80519000-80520800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:80519200-80519600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr6:80519200-80519600	Weak transcription	Fetal Heart	heart
15	chr6:80519200-80519600	Weak transcription	Fetal Lung	lung
16	chr6:80519400-80520000	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr6:80519400-80520000	Enhancers	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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