Variant report

Variant	rs58678352
Chromosome Location	chr11:34261360-34261361
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:34260780..34263020-chr11:34279926..34282268,2	MCF-7	breast:
2	chr11:34256033..34257760-chr11:34260641..34262431,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11822418	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11827045	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757435	chr11:34220504-34370236	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759816	chr11:34220504-34370236	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv818809	chr11:34239730-34354076	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv2753052	chr11:34247462-34358300	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv897204	chr11:34248229-34271712	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv897205	chr11:34248229-34507213	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv897206	chr11:34253421-34337564	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv897207	chr11:34253683-34621004	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
9	nsv897208	chr11:34257064-34562247	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34245200-34263800	Weak transcription	Right Atrium	heart
2	chr11:34245200-34264200	Weak transcription	Aorta	Aorta
3	chr11:34245600-34263600	Weak transcription	Right Ventricle	heart
4	chr11:34249600-34263600	Weak transcription	Gastric	stomach
5	chr11:34256000-34263800	Weak transcription	Colonic Mucosa	Colon
6	chr11:34256000-34270600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr11:34256200-34263400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:34256200-34263400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr11:34256200-34263400	Weak transcription	HSMMtube	muscle
10	chr11:34256200-34263600	Weak transcription	Left Ventricle	heart
11	chr11:34256200-34266800	Weak transcription	Spleen	Spleen
12	chr11:34256200-34267200	Weak transcription	Psoas Muscle	Psoas
13	chr11:34256400-34265400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr11:34256400-34265600	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr11:34257200-34263200	Weak transcription	Hela-S3	cervix
16	chr11:34257200-34265000	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr11:34257400-34264000	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr11:34257600-34263400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr11:34257600-34265000	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr11:34257600-34265400	Weak transcription	Brain Hippocampus Middle	brain
21	chr11:34257800-34264000	Weak transcription	Brain Substantia Nigra	brain
22	chr11:34258200-34261400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr11:34258200-34265400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr11:34258400-34266600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr11:34258400-34266800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr11:34258600-34265600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr11:34258600-34266200	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr11:34258800-34261400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr11:34260000-34262200	Enhancers	A549	lung
30	chr11:34260200-34262800	Enhancers	Fetal Thymus	thymus
31	chr11:34260200-34263200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr11:34260400-34263400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr11:34260400-34264000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr11:34260600-34262000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr11:34260600-34262000	Enhancers	Fetal Muscle Trunk	muscle
36	chr11:34260600-34263800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr11:34260800-34261600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr11:34260800-34263400	Weak transcription	HSMM	muscle
39	chr11:34261000-34262000	Enhancers	Fetal Muscle Leg	muscle
40	chr11:34261200-34261400	Enhancers	HUES6 Cell Line	embryonic stem cell
41	chr11:34261200-34261400	Enhancers	Sigmoid Colon	Sigmoid Colon
42	chr11:34261200-34261600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
43	chr11:34261200-34261600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr11:34261200-34261600	Enhancers	K562	blood
45	chr11:34261200-34261800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr11:34261200-34261800	Enhancers	iPS-18 Cell Line	embryonic stem cell
47	chr11:34261200-34262000	Enhancers	ES-I3 Cell Line	embryonic stem cell
48	chr11:34261200-34262000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr11:34261200-34262000	Enhancers	HUES64 Cell Line	embryonic stem cell
50	chr11:34261200-34262000	Enhancers	Primary B cells from peripheral blood	blood

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