Variant report

Variant	rs58697202
Chromosome Location	chr10:25639787-25639788
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12778817	0.83[AMR][1000 genomes]
rs55979690	0.81[ASN][1000 genomes]
rs56845226	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56982575	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58180203	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58857830	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61401625	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs74123864	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74123865	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74123866	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74123867	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761583	chr10:25525657-25722444	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3371273	chr10:25636346-25640744	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25632400-25642600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr10:25639200-25640200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr10:25639400-25639800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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