Variant report
| Variant | rs58699988 |
|---|---|
| Chromosome Location | chr7:126262771-126262772 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | 7:126085913-126088095..7:126261591-126264015 | H1-hESC | embryonic stem cell: | embryo |
| 2 | 7:126261591-126264015..7:127009457-127018926 | H1-hESC | embryonic stem cell: | embryo |
| 3 | 7:126261591-126264015..7:126890676-126899918 | H1-hESC | embryonic stem cell: | embryo |
| 4 | 7:126261591-126264015..7:126756671-126761022 | H1-hESC | embryonic stem cell: | embryo |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000179603 | Chromatin interaction |
| ENSG00000048405 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10246061 | 0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10274867 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11763805 | 0.88[EUR][1000 genomes] |
| rs11769015 | 0.89[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs11770188 | 0.89[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs17149953 | 0.89[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs17149975 | 0.89[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs17149978 | 0.85[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs17150011 | 0.89[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs17610771 | 0.98[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2237744 | 0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs41463444 | 0.89[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs56142844 | 0.89[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs56256561 | 0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs57391111 | 0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs60714151 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs62477862 | 0.84[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs62477869 | 0.89[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs62479322 | 0.86[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs73224961 | 0.89[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs73224962 | 0.89[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs73224963 | 0.89[EUR][1000 genomes];0.85[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv529300 | chr7:125669493-126587858 | Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv1032938 | chr7:126067684-126587859 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv539119 | chr7:126067684-126587859 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 4 | nsv889187 | chr7:126219766-126478190 | Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer | Chromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
