Variant report
| Variant | rs58701532 |
|---|---|
| Chromosome Location | chr4:143904721-143904722 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:143903053..143905362-chr4:144105356..144107537,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000170185 | Chromatin interaction |
| ENSG00000250326 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs55675363 | 1.00[AMR][1000 genomes] |
| rs55920161 | 1.00[AMR][1000 genomes] |
| rs55947218 | 1.00[AMR][1000 genomes] |
| rs56330901 | 1.00[AMR][1000 genomes] |
| rs57206134 | 1.00[AMR][1000 genomes] |
| rs57770652 | 1.00[AMR][1000 genomes] |
| rs58070744 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58306079 | 1.00[AMR][1000 genomes] |
| rs60285299 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60387330 | 1.00[AMR][1000 genomes] |
| rs61538113 | 1.00[AMR][1000 genomes] |
| rs61741556 | 1.00[AMR][1000 genomes] |
| rs73850569 | 1.00[AMR][1000 genomes] |
| rs73850572 | 1.00[AMR][1000 genomes] |
| rs73850573 | 1.00[AMR][1000 genomes] |
| rs73850574 | 1.00[AMR][1000 genomes] |
| rs73850575 | 1.00[AMR][1000 genomes] |
| rs73850577 | 1.00[AMR][1000 genomes] |
| rs73850580 | 1.00[AMR][1000 genomes] |
| rs73850581 | 1.00[AMR][1000 genomes] |
| rs73850587 | 1.00[AMR][1000 genomes] |
| rs73850588 | 1.00[AMR][1000 genomes] |
| rs73850592 | 1.00[AMR][1000 genomes] |
| rs73850620 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73850621 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73850622 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73850641 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73850662 | 1.00[AMR][1000 genomes] |
| rs73853610 | 1.00[AMR][1000 genomes] |
| rs7654096 | 1.00[AMR][1000 genomes] |
| rs7668584 | 1.00[AMR][1000 genomes] |
| rs7690525 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830102 | chr4:143820268-143953611 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv1033285 | chr4:143884298-144010784 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | n/a |
| 3 | nsv537288 | chr4:143884298-144010784 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:143904200-143905400 | Enhancers | Fetal Intestine Large | intestine |
| 2 | chr4:143904600-143905400 | Enhancers | Fetal Intestine Small | intestine |
