Variant report

Variant	rs58710516
Chromosome Location	chr5:98082280-98082281
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11954623	1.00[AMR][1000 genomes]
rs11957518	1.00[AMR][1000 genomes]
rs1508794	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1508795	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17166354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17166367	1.00[AMR][1000 genomes]
rs17166368	1.00[AMR][1000 genomes]
rs2035229	1.00[AMR][1000 genomes]
rs2036691	1.00[AMR][1000 genomes]
rs3952932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55660533	1.00[AMR][1000 genomes]
rs57293752	1.00[AMR][1000 genomes]
rs6890688	1.00[AMR][1000 genomes]
rs6895731	1.00[AMR][1000 genomes]
rs73151405	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73151407	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73151426	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73151428	1.00[AMR][1000 genomes]
rs73151441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73151444	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73151454	1.00[AMR][1000 genomes]
rs73151459	1.00[AMR][1000 genomes]
rs73151463	1.00[AMR][1000 genomes]
rs73151464	1.00[AMR][1000 genomes]
rs73151473	1.00[AMR][1000 genomes]
rs73153510	1.00[AMR][1000 genomes]
rs7707936	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs906681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032060	chr5:98022226-98093492	Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv537817	chr5:98022226-98093492	Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv882414	chr5:98063710-98193164	Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98076800-98090600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr5:98079000-98082400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr5:98082200-98084800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links