Variant report

Variant	rs58716859
Chromosome Location	chr13:51150869-51150870
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51148960..51151212-chr13:51161969..51163948,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs56071165	1.00[AMR][1000 genomes]
rs57862685	1.00[AMR][1000 genomes]
rs59628841	1.00[AMR][1000 genomes]
rs59955074	1.00[AMR][1000 genomes]
rs61510431	1.00[AMR][1000 genomes]
rs61619820	1.00[AMR][1000 genomes]
rs73485666	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73485690	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73487855	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73487899	1.00[AMR][1000 genomes]
rs73490013	1.00[AMR][1000 genomes]
rs73490019	1.00[AMR][1000 genomes]
rs73490042	1.00[AMR][1000 genomes]
rs73490056	1.00[AMR][1000 genomes]
rs73490060	1.00[AMR][1000 genomes]
rs73492016	1.00[AMR][1000 genomes]
rs73492050	1.00[AMR][1000 genomes]
rs73492077	1.00[AMR][1000 genomes]
rs73492079	1.00[AMR][1000 genomes]
rs74077867	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74078134	1.00[AMR][1000 genomes]
rs7995277	1.00[AMR][1000 genomes]
rs7996975	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035151	chr13:50513535-51167850	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1254 gene(s)	inside rSNPs	diseases
2	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
4	esv2753864	chr13:51136699-51375199	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51146200-51151200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr13:51147200-51151200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr13:51147200-51151200	Enhancers	Osteobl	bone
4	chr13:51147600-51151000	Enhancers	Gastric	stomach
5	chr13:51147600-51151200	Enhancers	HSMM	muscle
6	chr13:51147800-51160800	Weak transcription	Dnd41	blood
7	chr13:51148000-51152400	Weak transcription	Psoas Muscle	Psoas
8	chr13:51148200-51151400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr13:51148400-51151000	Enhancers	Muscle Satellite Cultured Cells	--
10	chr13:51148800-51151400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr13:51148800-51151600	Enhancers	Fetal Muscle Leg	muscle
12	chr13:51149000-51151200	Enhancers	HSMMtube	muscle
13	chr13:51149200-51151200	Enhancers	Fetal Thymus	thymus
14	chr13:51149400-51151200	Enhancers	Left Ventricle	heart
15	chr13:51149400-51151200	Enhancers	Pancreas	Pancrea
16	chr13:51149400-51151200	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr13:51149400-51151200	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr13:51149600-51162200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr13:51149800-51151000	Enhancers	Small Intestine	intestine
20	chr13:51149800-51151000	Enhancers	Thymus	Thymus
21	chr13:51149800-51151200	Enhancers	Liver	Liver
22	chr13:51149800-51151200	Enhancers	Stomach Mucosa	stomach
23	chr13:51150000-51151000	Enhancers	Sigmoid Colon	Sigmoid Colon
24	chr13:51150000-51153800	Weak transcription	NH-A	brain
25	chr13:51150200-51151000	Enhancers	Brain Substantia Nigra	brain
26	chr13:51150200-51151000	Enhancers	Lung	lung
27	chr13:51150200-51151000	Enhancers	Right Atrium	heart
28	chr13:51150200-51151000	Enhancers	Right Ventricle	heart
29	chr13:51150200-51152000	Weak transcription	Fetal Heart	heart
30	chr13:51150400-51151000	Enhancers	Aorta	Aorta
31	chr13:51150400-51151000	Enhancers	Brain Inferior Temporal Lobe	brain
32	chr13:51150400-51151000	Enhancers	Esophagus	oesophagus
33	chr13:51150400-51151200	Enhancers	Adipose Nuclei	Adipose
34	chr13:51150400-51167400	Weak transcription	HepG2	liver
35	chr13:51150800-51151000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr13:51150800-51151000	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr13:51150800-51152800	Weak transcription	Fetal Kidney	kidney
38	chr13:51150800-51160200	Weak transcription	Fetal Muscle Trunk	muscle

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