Variant report
| Variant | rs58717549 |
|---|---|
| Chromosome Location | chr8:63608349-63608350 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:63605230..63606982-chr8:63607135..63609318,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs1351363 | 1.00[ASN][1000 genomes] |
| rs16918927 | 1.00[EUR][1000 genomes] |
| rs16929168 | 1.00[EUR][1000 genomes] |
| rs16929206 | 1.00[EUR][1000 genomes] |
| rs16929234 | 1.00[EUR][1000 genomes] |
| rs16929308 | 1.00[EUR][1000 genomes] |
| rs16929351 | 1.00[EUR][1000 genomes] |
| rs16929371 | 1.00[EUR][1000 genomes] |
| rs16929390 | 1.00[EUR][1000 genomes] |
| rs16929420 | 1.00[ASN][1000 genomes] |
| rs16929430 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16929437 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2101043 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2101044 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2127581 | 1.00[EUR][1000 genomes] |
| rs28510229 | 1.00[ASN][1000 genomes] |
| rs57900808 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58391948 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60709086 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6993807 | 1.00[EUR][1000 genomes] |
| rs73256928 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73256936 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73256943 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73256979 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73264897 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73266909 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73266967 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1018879 | chr8:63281724-63937632 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 2 | nsv831340 | chr8:63515126-63702660 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv890960 | chr8:63516962-63629549 | Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:63603400-63614400 | Weak transcription | Fetal Brain Male | brain |
| 2 | chr8:63603400-63620000 | Weak transcription | Brain Germinal Matrix | brain |
