Variant report

Variant	rs58718949
Chromosome Location	chr5:59623963-59623964
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs4640751	1.00[AMR][1000 genomes]
rs4643905	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60264107	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6874388	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6879098	1.00[AMR][1000 genomes]
rs6879388	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73104773	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73106737	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73106738	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73106748	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73106750	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7341019	0.92[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025856	chr5:59188419-59928852	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv830316	chr5:59480269-59689829	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:59620000-59625000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr5:59620400-59629400	Weak transcription	Aorta	Aorta
3	chr5:59620400-59631000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:59623200-59626200	Weak transcription	Placenta Amnion	Placenta Amnion

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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