Variant report
| Variant | rs58724157 |
|---|---|
| Chromosome Location | chr3:23233321-23233322 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10154847 | 0.81[EUR][1000 genomes] |
| rs10510536 | 0.92[ASN][1000 genomes] |
| rs11916059 | 0.81[EUR][1000 genomes] |
| rs11926494 | 0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11927173 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs13314285 | 0.96[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1495130 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs17012800 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs17012829 | 0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1908475 | 0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2017065 | 0.86[ASN][1000 genomes] |
| rs4327332 | 0.86[ASN][1000 genomes] |
| rs56223303 | 0.93[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs57131555 | 0.87[ASN][1000 genomes] |
| rs60782093 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs61578857 | 0.89[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6765801 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6769167 | 0.86[ASN][1000 genomes] |
| rs6780569 | 0.80[EUR][1000 genomes] |
| rs6792370 | 0.90[ASN][1000 genomes] |
| rs7612463 | 0.86[ASN][1000 genomes] |
| rs7627380 | 0.86[ASN][1000 genomes] |
| rs9831921 | 0.96[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs9866739 | 0.91[ASN][1000 genomes] |
| rs9867046 | 0.90[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv999882 | chr3:23121533-23257718 | Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv834636 | chr3:23138653-23301443 | Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:23231000-23235200 | Weak transcription | Primary monocytes fromperipheralblood | blood |
| 2 | chr3:23231200-23237400 | Weak transcription | Primary hematopoietic stem cells short term culture | blood |
