Variant report

Variant	rs58729647
Chromosome Location	chr14:65729557-65729558
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1038237	0.81[AMR][1000 genomes]
rs1038238	0.81[AMR][1000 genomes]
rs1256528	0.81[AMR][1000 genomes]
rs56684970	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73276152	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv832818	chr14:65706859-65882320	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65697200-65746800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:65714000-65735400	Weak transcription	Primary B cells from cord blood	blood
3	chr14:65725400-65730000	Weak transcription	HSMM	muscle
4	chr14:65726000-65729800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr14:65727000-65730000	Weak transcription	HUVEC	blood vessel
6	chr14:65727200-65735000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr14:65727400-65749600	Weak transcription	Gastric	stomach
8	chr14:65727600-65729800	Weak transcription	Stomach Mucosa	stomach
9	chr14:65727600-65730000	Weak transcription	Osteobl	bone
10	chr14:65728200-65729800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr14:65728200-65730000	Weak transcription	NH-A	brain
12	chr14:65728400-65729800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr14:65728400-65729800	Weak transcription	HepG2	liver
14	chr14:65728400-65730000	Weak transcription	NHDF-Ad	bronchial
15	chr14:65728800-65730000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr14:65729000-65730000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr14:65729000-65730000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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