Variant report

Variant	rs58734600
Chromosome Location	chr16:81172908-81172909
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:26)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:26 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr16:81172825-81173103	A549	lung:	n/a	n/a
2	CTCF	chr16:81172662-81173271	HCT-116	colon:	n/a	n/a
3	RAD21	chr16:81172720-81173259	MCF-7	breast:	n/a	n/a
4	RAD21	chr16:81172838-81173253	HCT-116	colon:	n/a	n/a
5	CTCF	chr16:81172870-81173049	IMR90	lung:	n/a	n/a
6	CTCF	chr16:81172860-81173010	HCPEpiC	choroid plexus:	n/a	n/a
7	CTCF	chr16:81172880-81173030	MCF-7	breast:	n/a	n/a
8	CTCF	chr16:81172706-81173374	MCF-7	breast:	n/a	n/a
9	CTCF	chr16:81172763-81173214	MCF-7	breast:	n/a	n/a
10	RAD21	chr16:81172874-81173112	HepG2	liver:	n/a	n/a
11	RAD21	chr16:81172706-81173345	HCT-116	colon:	n/a	n/a
12	NR2F2	chr16:81172718-81173516	MCF-7	breast:	n/a	n/a
13	RAD21	chr16:81172820-81173192	HepG2	liver:	n/a	n/a
14	RAD21	chr16:81172820-81173243	A549	lung:	n/a	n/a
15	CTCF	chr16:81172880-81173030	Caco-2	colon:	n/a	n/a
16	RAD21	chr16:81172690-81173268	MCF-7	breast:	n/a	n/a
17	GATA3	chr16:81172674-81173583	MCF-7	breast:	n/a	n/a
18	ZNF217	chr16:81172872-81173014	MCF-7	breast:	n/a	n/a
19	CTCF	chr16:81172880-81173030	HBMEC	blood vessel:	n/a	n/a
20	CTCF	chr16:81172880-81173030	HCT-116	colon:	n/a	n/a
21	RAD21	chr16:81172865-81173058	SK-N-SH_RA	brain:	n/a	n/a
22	CTCF	chr16:81172866-81173099	K562	blood:	n/a	n/a
23	CTCF	chr16:81172885-81173056	HepG2	liver:	n/a	n/a
24	CTCF	chr16:81172784-81173143	A549	lung:	n/a	n/a
25	RAD21	chr16:81172849-81173394	H1-hESC	embryonic stem cell:	n/a	n/a
26	RAD21	chr16:81172826-81173148	ECC-1	luminal epithelium:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:81128511..81130849-chr16:81169835..81172966,4	MCF-7	breast:
2	chr16:81172499..81173473-chr16:81231950..81233302,5	MCF-7	breast:
3	chr16:81172576..81173403-chr16:81248138..81248840,3	MCF-7	breast:

No data

Variant related genes	Relation type
PKD1L2	TF binding region
ENSG00000140905	Chromatin interaction
ENSG00000166473	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs41422949	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74030544	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv532597	chr16:81009718-81388348	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv427984	chr16:81026691-81320341	Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	esv2422360	chr16:81066033-81180727	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	esv2751615	chr16:81093099-81307599	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
6	nsv530715	chr16:81117168-81252875	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv907005	chr16:81121353-81194912	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	nsv1067144	chr16:81129298-81181641	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv907007	chr16:81157521-81181423	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv978328	chr16:81166830-81197232	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
11	nsv960376	chr16:81170217-81214783	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
12	nsv827774	chr16:81170888-81177788	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
13	esv3436709	chr16:81171951-81176149	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	nsv1064742	chr16:81172662-81266841	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
15	nsv431520	chr16:81172699-81258899	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81130000-81187600	Weak transcription	Right Atrium	heart
2	chr16:81151400-81173000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr16:81154000-81198800	Weak transcription	Right Ventricle	heart
4	chr16:81155400-81174600	Weak transcription	Left Ventricle	heart
5	chr16:81165800-81174800	Weak transcription	Spleen	Spleen
6	chr16:81167200-81181000	Enhancers	Placenta	Placenta
7	chr16:81168800-81174000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr16:81169600-81173400	Enhancers	Adipose Nuclei	Adipose
9	chr16:81170000-81173000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr16:81170000-81174600	Weak transcription	Esophagus	oesophagus
11	chr16:81170800-81174800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr16:81171000-81173000	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr16:81171000-81173200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr16:81171000-81176000	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr16:81171200-81173000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr16:81171200-81173000	Weak transcription	HepG2	liver
17	chr16:81171200-81174600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr16:81171200-81174600	Weak transcription	HMEC	breast
19	chr16:81171200-81193400	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr16:81171200-81206400	Weak transcription	Ovary	ovary
21	chr16:81171400-81174600	Weak transcription	Brain Substantia Nigra	brain
22	chr16:81171400-81174800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr16:81171400-81185400	Weak transcription	Brain Anterior Caudate	brain
24	chr16:81171600-81174800	Weak transcription	Brain Hippocampus Middle	brain
25	chr16:81171600-81174800	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr16:81171600-81185400	Weak transcription	Brain Cingulate Gyrus	brain
27	chr16:81171600-81192600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr16:81171800-81173000	Weak transcription	Fetal Brain Male	brain
29	chr16:81172800-81173400	Enhancers	A549	lung
30	chr16:81172800-81173600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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