Variant report

Variant	rs58758405
Chromosome Location	chr4:86596790-86596791
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:86591420..86593413-chr4:86595688..86598132,2	K562	blood:
2	chr4:86591944..86594677-chr4:86595648..86598100,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10021031	1.00[AMR][1000 genomes]
rs55856244	1.00[AMR][1000 genomes]
rs55856982	1.00[AMR][1000 genomes]
rs56131080	1.00[AMR][1000 genomes]
rs56777230	1.00[AMR][1000 genomes]
rs56937766	1.00[AMR][1000 genomes]
rs57480554	1.00[AMR][1000 genomes]
rs57974495	1.00[AMR][1000 genomes]
rs58557354	1.00[AMR][1000 genomes]
rs59039102	1.00[AMR][1000 genomes]
rs59598716	1.00[AMR][1000 genomes]
rs6850901	1.00[AMR][1000 genomes]
rs72979954	1.00[AMR][1000 genomes]
rs72982052	1.00[AMR][1000 genomes]
rs72982057	1.00[AMR][1000 genomes]
rs72982061	1.00[AMR][1000 genomes]
rs73832882	1.00[AMR][1000 genomes]
rs73833364	1.00[AMR][1000 genomes]
rs73833367	1.00[AMR][1000 genomes]
rs73833368	1.00[AMR][1000 genomes]
rs73833374	1.00[AMR][1000 genomes]
rs73835209	1.00[AMR][1000 genomes]
rs73835210	1.00[AMR][1000 genomes]
rs73835228	1.00[AMR][1000 genomes]
rs73835229	1.00[AMR][1000 genomes]
rs73835233	1.00[AMR][1000 genomes]
rs73835513	1.00[AMR][1000 genomes]
rs73835519	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461566	chr4:85988032-86725502	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv594747	chr4:85988032-86725502	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv470048	chr4:85998783-86720838	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv829999	chr4:86500257-86666019	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86589000-86601600	Weak transcription	HSMMtube	muscle
2	chr4:86590000-86604600	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr4:86591400-86619400	Weak transcription	Pancreas	Pancrea
4	chr4:86592000-86597600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr4:86593200-86597400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr4:86594000-86596800	Weak transcription	Left Ventricle	heart
7	chr4:86594000-86597800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr4:86594400-86598400	Weak transcription	Right Atrium	heart
9	chr4:86594400-86601400	Weak transcription	Spleen	Spleen
10	chr4:86594400-86601600	Weak transcription	HSMM	muscle
11	chr4:86594600-86597600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr4:86594600-86600000	Weak transcription	Primary hematopoietic stem cells	blood
13	chr4:86594800-86597800	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr4:86595000-86596800	Strong transcription	Primary B cells from cord blood	blood
15	chr4:86595000-86597800	Weak transcription	Fetal Heart	heart
16	chr4:86595000-86600000	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr4:86595200-86597400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr4:86595200-86599200	Enhancers	Fetal Muscle Leg	muscle
19	chr4:86595200-86600000	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr4:86595400-86598000	Weak transcription	NHDF-Ad	bronchial
21	chr4:86595400-86598800	Enhancers	Fetal Stomach	stomach
22	chr4:86596000-86596800	Enhancers	Fetal Brain Male	brain
23	chr4:86596000-86597200	Enhancers	H9 Cell Line	embryonic stem cell
24	chr4:86596000-86597800	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr4:86596000-86598000	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr4:86596200-86597400	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr4:86596200-86599200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr4:86596400-86596800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr4:86596400-86597200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr4:86596400-86597400	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr4:86596400-86597400	Enhancers	iPS-20b Cell Line	embryonic stem cell
32	chr4:86596400-86597600	Strong transcription	Primary B cells from peripheral blood	blood
33	chr4:86596400-86597800	Enhancers	HUES48 Cell Line	embryonic stem cell
34	chr4:86596400-86598000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
35	chr4:86596600-86596800	Enhancers	Brain Substantia Nigra	brain
36	chr4:86596600-86597000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
37	chr4:86596600-86598200	Enhancers	iPS-18 Cell Line	embryonic stem cell
38	chr4:86596600-86601600	Weak transcription	Brain Hippocampus Middle	brain

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