Variant report

Variant	rs58774362
Chromosome Location	chr9:100557390-100557391
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16924223	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56350461	1.00[AMR][1000 genomes]
rs58156462	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73655178	1.00[AMR][1000 genomes]
rs73655179	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73655181	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73655183	1.00[AMR][1000 genomes]
rs73656851	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043753	chr9:100458109-100599265	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100554400-100563600	Weak transcription	HMEC	breast
2	chr9:100554600-100557400	Enhancers	Placenta	Placenta
3	chr9:100555000-100557400	Enhancers	Placenta Amnion	Placenta Amnion
4	chr9:100556600-100557400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr9:100557000-100557400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr9:100557200-100557400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr9:100557200-100557400	Enhancers	NHEK	skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links