Variant report

Variant	rs58779953
Chromosome Location	chr6:64248020-64248021
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:64247573..64249250-chr6:64281083..64282735,2	MCF-7	breast:
2	chr6:64245722..64249524-chr6:64282178..64283957,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000266680	Chromatin interaction
ENSG00000112245	Chromatin interaction

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs1062193	0.96[ASN][1000 genomes]
rs11755111	0.89[ASN][1000 genomes]
rs11756680	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11757655	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11759362	0.87[ASN][1000 genomes]
rs1197892	0.92[ASN][1000 genomes]
rs1210839	0.92[ASN][1000 genomes]
rs1570313	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1681953	0.89[ASN][1000 genomes]
rs1681967	0.96[ASN][1000 genomes]
rs16879705	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16894454	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs16894460	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16894480	0.92[ASN][1000 genomes]
rs16894493	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1744156	0.96[ASN][1000 genomes]
rs1744163	0.96[ASN][1000 genomes]
rs1872288	0.89[ASN][1000 genomes]
rs1905595	0.87[ASN][1000 genomes]
rs1923521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1923522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2075656	0.96[ASN][1000 genomes]
rs2622310	0.99[ASN][1000 genomes]
rs2622313	0.96[ASN][1000 genomes]
rs28396397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28635226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2881842	0.89[ASN][1000 genomes]
rs35468218	0.92[ASN][1000 genomes]
rs35811627	0.92[ASN][1000 genomes]
rs3800494	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3857527	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4710434	0.94[ASN][1000 genomes]
rs56950873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56977573	0.89[ASN][1000 genomes]
rs57258726	0.85[ASN][1000 genomes]
rs57519486	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57899418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58016244	0.87[ASN][1000 genomes]
rs58173616	0.89[ASN][1000 genomes]
rs58374599	0.88[ASN][1000 genomes]
rs59458355	0.89[ASN][1000 genomes]
rs59589817	0.89[ASN][1000 genomes]
rs60727297	0.89[ASN][1000 genomes]
rs60863270	0.92[ASN][1000 genomes]
rs61382532	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs61426335	0.92[ASN][1000 genomes]
rs61580957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6454298	0.89[ASN][1000 genomes]
rs66500769	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66508463	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs66559225	0.89[ASN][1000 genomes]
rs66618112	0.92[ASN][1000 genomes]
rs66648865	0.92[ASN][1000 genomes]
rs66683185	0.89[ASN][1000 genomes]
rs66769846	0.89[ASN][1000 genomes]
rs66924207	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs66943356	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs66984720	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs67048845	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs67094823	0.83[EUR][1000 genomes]
rs67118169	0.89[ASN][1000 genomes]
rs67125777	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs67260200	0.96[ASN][1000 genomes]
rs67549604	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs67640372	0.92[ASN][1000 genomes]
rs67805256	0.92[ASN][1000 genomes]
rs67879075	0.89[ASN][1000 genomes]
rs67885904	0.87[ASN][1000 genomes]
rs6929720	0.92[ASN][1000 genomes]
rs6936079	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs72880815	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72880852	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72880876	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72880879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72880884	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72882716	0.93[ASN][1000 genomes]
rs72882748	0.92[ASN][1000 genomes]
rs72882751	0.92[ASN][1000 genomes]
rs7746492	0.94[ASN][1000 genomes]
rs7766283	0.89[ASN][1000 genomes]
rs7766347	0.94[ASN][1000 genomes]
rs7767556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9449520	0.92[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64240400-64254000	Weak transcription	Psoas Muscle	Psoas
2	chr6:64245600-64249400	Enhancers	Liver	Liver
3	chr6:64247000-64248200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:64247000-64248400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:64247000-64249000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr6:64247000-64249200	Enhancers	HMEC	breast
7	chr6:64247000-64249400	Genic enhancers	HepG2	liver
8	chr6:64247200-64248200	Flanking Active TSS	A549	lung
9	chr6:64247800-64248800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:64247800-64248800	Enhancers	NHEK	skin
11	chr6:64247800-64249000	Enhancers	Hela-S3	cervix
12	chr6:64247800-64252600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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