Variant report

Variant	rs58785492
Chromosome Location	chr5:146548077-146548078
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1030657	1.00[AMR][1000 genomes]
rs73314891	1.00[AMR][1000 genomes]
rs73316582	1.00[AMR][1000 genomes]
rs73318507	1.00[AMR][1000 genomes]
rs73318524	1.00[AMR][1000 genomes]
rs73325573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015804	chr5:146066000-146788233	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv537915	chr5:146066000-146788233	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv519847	chr5:146166378-146812647	Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv599938	chr5:146169511-146806365	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv869238	chr5:146179403-146787986	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146541200-146548800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr5:146542400-146555000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr5:146546400-146549200	Enhancers	HepG2	liver
4	chr5:146546600-146550400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr5:146547000-146549400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr5:146547200-146550400	Enhancers	Duodenum Mucosa	Duodenum
7	chr5:146547200-146550400	Enhancers	NHDF-Ad	bronchial
8	chr5:146547200-146550600	Enhancers	Fetal Intestine Large	intestine
9	chr5:146547200-146550600	Enhancers	Fetal Intestine Small	intestine
10	chr5:146547400-146549400	Enhancers	NH-A	brain
11	chr5:146547400-146549600	Enhancers	HSMMtube	muscle
12	chr5:146547400-146549800	Enhancers	Muscle Satellite Cultured Cells	--
13	chr5:146547600-146548400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr5:146547600-146549000	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr5:146547600-146549000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr5:146547600-146549600	Enhancers	Pancreatic Islets	Pancreatic Islet
17	chr5:146547600-146550400	Enhancers	NHLF	lung
18	chr5:146547800-146548400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr5:146547800-146548600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr5:146548000-146548200	Enhancers	Fetal Kidney	kidney
21	chr5:146548000-146548200	Enhancers	Spleen	Spleen
22	chr5:146548000-146548400	Enhancers	H1 Cell Line	embryonic stem cell
23	chr5:146548000-146548400	Enhancers	Pancreas	Pancrea
24	chr5:146548000-146548400	Flanking Active TSS	HSMM	muscle
25	chr5:146548000-146548800	Enhancers	Brain Hippocampus Middle	brain
26	chr5:146548000-146548800	Enhancers	Ovary	ovary
27	chr5:146548000-146548800	Enhancers	Small Intestine	intestine
28	chr5:146548000-146549200	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr5:146548000-146550000	Enhancers	Adipose Nuclei	Adipose

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