Variant report

Variant	rs58815851
Chromosome Location	chr5:74439111-74439112
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73763017	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018865	chr5:74246293-74494552	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv882189	chr5:74356857-74478078	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1016610	chr5:74403611-74627654	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2758000	chr5:74433760-74611714	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv2759350	chr5:74433760-74611714	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74438000-74439400	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr5:74438200-74439200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr5:74438400-74439200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr5:74438400-74439200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr5:74438400-74439200	Enhancers	Primary T cells from cord blood	blood
6	chr5:74438400-74439200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
7	chr5:74438400-74439200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr5:74438400-74439200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr5:74438400-74439400	Enhancers	H1 Cell Line	embryonic stem cell
10	chr5:74438400-74439400	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr5:74438400-74439400	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr5:74438600-74439400	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr5:74438600-74439400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr5:74438600-74439600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr5:74438800-74439200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
16	chr5:74438800-74439200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr5:74438800-74439200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr5:74438800-74439600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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