Variant report

Variant	rs58855129
Chromosome Location	chr14:65921951-65921952
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs74056738	0.81[AFR][1000 genomes]
rs74056759	0.88[AFR][1000 genomes]
rs74056790	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74056799	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74058512	1.00[AMR][1000 genomes]
rs74058526	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65892800-65929600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr14:65897000-65925600	Weak transcription	Aorta	Aorta
3	chr14:65898400-65935600	Weak transcription	Gastric	stomach
4	chr14:65899600-65929000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr14:65902200-65927000	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr14:65902400-65928400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr14:65903200-65922600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr14:65903200-65925200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr14:65905800-65936600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr14:65906000-65923800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr14:65906000-65926800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr14:65906200-65922000	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr14:65906600-65922800	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr14:65911200-65942400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr14:65912200-65922400	Weak transcription	Duodenum Mucosa	Duodenum
16	chr14:65913000-65924000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr14:65913200-65922400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr14:65913200-65927000	Weak transcription	NH-A	brain
19	chr14:65913200-65928000	Weak transcription	Osteobl	bone
20	chr14:65913800-65922800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr14:65913800-65928000	Weak transcription	HUVEC	blood vessel
22	chr14:65913800-65942400	Weak transcription	Left Ventricle	heart
23	chr14:65914200-65922400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr14:65914600-65925000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr14:65915600-65928200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr14:65916600-65922600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr14:65916600-65923000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr14:65917200-65936600	Weak transcription	Pancreas	Pancrea
29	chr14:65918400-65922000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr14:65918400-65928000	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr14:65918400-65928200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr14:65918600-65922800	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr14:65918600-65928000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr14:65918600-65935600	Weak transcription	Fetal Stomach	stomach
35	chr14:65918800-65922400	Weak transcription	Primary T cells from cord blood	blood
36	chr14:65918800-65922600	Weak transcription	Primary B cells from cord blood	blood
37	chr14:65918800-65922600	Weak transcription	Primary B cells from peripheral blood	blood
38	chr14:65918800-65922600	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr14:65918800-65923000	Weak transcription	Brain Germinal Matrix	brain
40	chr14:65918800-65923200	Weak transcription	Fetal Intestine Small	intestine
41	chr14:65918800-65924200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr14:65918800-65924800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr14:65918800-65927000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr14:65918800-65928400	Weak transcription	Fetal Thymus	thymus
45	chr14:65919200-65922800	Weak transcription	Primary hematopoietic stem cells	blood
46	chr14:65919200-65923400	Weak transcription	Fetal Intestine Large	intestine
47	chr14:65919400-65922400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr14:65920000-65928200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr14:65920400-65926000	ZNF genes & repeats	GM12878-XiMat	blood
50	chr14:65920400-65937800	Weak transcription	Ovary	ovary

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