Variant report

Variant	rs58857830
Chromosome Location	chr10:25638220-25638221
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10508692	0.80[AFR][1000 genomes]
rs12777013	0.91[AMR][1000 genomes]
rs12778704	0.91[AMR][1000 genomes]
rs34740599	0.91[AMR][1000 genomes]
rs35361058	0.91[AMR][1000 genomes]
rs55979690	0.81[ASN][1000 genomes]
rs56845226	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56982575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58180203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58697202	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61401625	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71495434	0.91[AMR][1000 genomes]
rs74123864	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74123865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74123866	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74123867	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761583	chr10:25525657-25722444	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3371273	chr10:25636346-25640744	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2492571	chr10:25637591-25639384	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv1997102	chr10:25638093-25639027	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3481618	chr10:25638166-25638932	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3496884	chr10:25638183-25638907	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3496883	chr10:25638187-25638930	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv19471	chr10:25638194-25638834	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3481840	chr10:25638212-25638908	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3481729	chr10:25638220-25638903	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25632400-25642600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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