Variant report

Variant	rs58858460
Chromosome Location	chr15:79139726-79139727
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10519214	0.83[ASN][1000 genomes]
rs16970190	0.84[ASN][1000 genomes]
rs16970207	0.80[ASN][1000 genomes]
rs3803545	0.80[ASN][1000 genomes]
rs4073321	0.88[AMR][1000 genomes]
rs4778627	0.84[ASN][1000 genomes]
rs4778645	0.83[ASN][1000 genomes]
rs4778659	0.82[ASN][1000 genomes]
rs4778858	0.84[ASN][1000 genomes]
rs4778952	0.82[ASN][1000 genomes]
rs56144940	0.87[ASN][1000 genomes]
rs56179040	0.86[ASN][1000 genomes]
rs56963875	0.84[ASN][1000 genomes]
rs57185710	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs57547095	0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs57923940	0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs58158830	0.88[AMR][1000 genomes]
rs58257692	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs59973885	0.84[ASN][1000 genomes]
rs60589519	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61009187	0.84[ASN][1000 genomes]
rs61477430	0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6495342	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7171615	0.84[ASN][1000 genomes]
rs7402370	0.88[AMR][1000 genomes]
rs7402487	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7403094	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7403100	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv904431	chr15:79006442-79155088	Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv33573	chr15:79053484-79293881	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv904432	chr15:79066932-79175813	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79134000-79147400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr15:79134800-79142800	Weak transcription	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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