Variant report

Variant	rs58858474
Chromosome Location	chr6:132938096-132938097
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1081075	0.96[ASN][1000 genomes]
rs1081076	0.94[ASN][1000 genomes]
rs1081077	0.96[ASN][1000 genomes]
rs1081078	0.94[ASN][1000 genomes]
rs4130812	1.00[AFR][1000 genomes]
rs55687137	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56823002	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58942161	0.82[ASN][1000 genomes]
rs59148659	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73555844	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73555846	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73555851	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73555853	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73555855	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73555862	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73775132	0.96[ASN][1000 genomes]
rs8192647	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132937000-132938200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:132937000-132939000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:132937200-132938800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:132937400-132939000	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr6:132937600-132938400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr6:132937600-132938400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:132937800-132938200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr6:132938000-132938200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:132938000-132938200	Enhancers	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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