Variant report

Variant	rs58870443
Chromosome Location	chr14:72474087-72474088
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10131317	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10483838	0.80[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs2239266	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2332706	0.89[ASN][1000 genomes]
rs28450218	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28644384	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28718774	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3784054	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4899413	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4902972	0.90[ASN][1000 genomes]
rs59707038	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73293287	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72470800-72474200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr14:72472800-72474600	Strong transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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