Variant report

Variant	rs58903855
Chromosome Location	chr14:31476081-31476082
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:31474762..31478016-chr14:31494036..31497480,5	MCF-7	breast:
2	chr14:31476012..31477905-chr14:31492310..31494262,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196792	Chromatin interaction
ENSG00000100478	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs17097507	1.00[AMR][1000 genomes]
rs17097526	1.00[AMR][1000 genomes]
rs17097552	1.00[AMR][1000 genomes]
rs56222547	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56229109	1.00[AMR][1000 genomes]
rs56306509	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59093742	1.00[AMR][1000 genomes]
rs7142330	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7157398	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74040906	1.00[AMR][1000 genomes]
rs74040940	1.00[AMR][1000 genomes]
rs74040941	1.00[AMR][1000 genomes]
rs74041073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74041077	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74041098	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74042105	1.00[AFR][1000 genomes]
rs74042109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74042112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74042114	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9671818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564169	chr14:30819087-31541494	Strong transcription Genic enhancers ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv901581	chr14:30978745-31585289	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1035937	chr14:31447842-31579660	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv542018	chr14:31447842-31579660	Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv1048736	chr14:31447842-31624912	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv1049063	chr14:31473521-31622741	Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31442400-31494400	Weak transcription	Gastric	stomach
2	chr14:31443400-31493800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr14:31458600-31494000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr14:31461200-31492400	Weak transcription	Fetal Kidney	kidney
5	chr14:31461200-31494400	Weak transcription	Small Intestine	intestine
6	chr14:31461400-31487400	Weak transcription	Right Ventricle	heart
7	chr14:31464200-31493600	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr14:31464400-31492400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr14:31465400-31492400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr14:31465600-31480400	Weak transcription	Ovary	ovary
11	chr14:31465600-31487400	Weak transcription	Spleen	Spleen
12	chr14:31466400-31490000	Weak transcription	NHDF-Ad	bronchial
13	chr14:31467800-31481800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr14:31467800-31484400	Weak transcription	Stomach Smooth Muscle	stomach
15	chr14:31467800-31485000	Weak transcription	Hela-S3	cervix
16	chr14:31467800-31487400	Weak transcription	Brain Cingulate Gyrus	brain
17	chr14:31467800-31487400	Weak transcription	Thymus	Thymus
18	chr14:31467800-31492000	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr14:31467800-31493000	Weak transcription	HSMMtube	muscle
20	chr14:31467800-31493400	Weak transcription	Brain Angular Gyrus	brain
21	chr14:31468000-31481800	Weak transcription	Lung	lung
22	chr14:31468000-31487600	Weak transcription	Brain Hippocampus Middle	brain
23	chr14:31468000-31489200	Weak transcription	NHLF	lung
24	chr14:31468000-31490200	Weak transcription	NH-A	brain
25	chr14:31468000-31493000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr14:31468200-31487600	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr14:31468400-31493200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr14:31468400-31493800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr14:31468600-31482200	Weak transcription	Placenta	Placenta
30	chr14:31468600-31487400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr14:31468600-31487400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr14:31468600-31487400	Weak transcription	Fetal Thymus	thymus
33	chr14:31468600-31490200	Weak transcription	Primary hematopoietic stem cells	blood
34	chr14:31468800-31493200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr14:31469000-31480800	Weak transcription	Fetal Lung	lung
36	chr14:31469000-31489800	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr14:31469200-31486800	Weak transcription	Primary B cells from peripheral blood	blood
38	chr14:31469200-31492000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr14:31469800-31492600	Weak transcription	Fetal Brain Male	brain
40	chr14:31470000-31493200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr14:31470200-31477000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr14:31470400-31477800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr14:31470400-31483600	Strong transcription	Fetal Stomach	stomach
44	chr14:31470400-31484400	Weak transcription	Stomach Mucosa	stomach
45	chr14:31470400-31492000	Weak transcription	Rectal Smooth Muscle	rectum
46	chr14:31470400-31493200	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr14:31470600-31478000	Weak transcription	Psoas Muscle	Psoas
48	chr14:31470600-31478400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr14:31470600-31480400	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr14:31470600-31480800	Weak transcription	Brain Germinal Matrix	brain

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