Variant report

Variant	rs58921436
Chromosome Location	chr4:122691740-122691741
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1051881	0.82[ASN][1000 genomes]
rs1803183	0.90[ASN][1000 genomes]
rs3217767	0.90[ASN][1000 genomes]
rs4075713	0.82[ASN][1000 genomes]
rs4077754	0.90[ASN][1000 genomes]
rs55685419	0.90[ASN][1000 genomes]
rs55803709	0.90[ASN][1000 genomes]
rs55936221	0.90[ASN][1000 genomes]
rs56030020	0.90[ASN][1000 genomes]
rs56221685	0.90[ASN][1000 genomes]
rs56300111	0.90[ASN][1000 genomes]
rs57779372	0.90[ASN][1000 genomes]
rs58745264	0.90[ASN][1000 genomes]
rs59268194	0.90[ASN][1000 genomes]
rs60240575	0.90[ASN][1000 genomes]
rs61180375	0.90[ASN][1000 genomes]
rs61434837	0.82[ASN][1000 genomes]
rs61665948	0.90[ASN][1000 genomes]
rs6823340	0.90[ASN][1000 genomes]
rs6825926	0.90[ASN][1000 genomes]
rs6830453	0.90[ASN][1000 genomes]
rs6836544	0.90[ASN][1000 genomes]
rs6854295	0.90[ASN][1000 genomes]
rs6858061	0.90[ASN][1000 genomes]
rs73844293	0.90[ASN][1000 genomes]
rs73844294	0.90[ASN][1000 genomes]
rs73844297	0.90[ASN][1000 genomes]
rs73844298	0.90[ASN][1000 genomes]
rs73847203	0.90[ASN][1000 genomes]
rs73847204	0.90[ASN][1000 genomes]
rs73847205	0.82[ASN][1000 genomes]
rs73847206	0.90[ASN][1000 genomes]
rs769243	0.90[ASN][1000 genomes]
rs7694815	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817261	chr4:122085173-123020068	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv997539	chr4:122544104-123274266	Genic enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv530157	chr4:122557302-123248756	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv461635	chr4:122633535-122720999	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv595357	chr4:122633535-122720999	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:122687600-122695200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr4:122689400-122695400	Weak transcription	Fetal Heart	heart

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