Variant report

Variant	rs589297
Chromosome Location	chr5:118126421-118126422
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:118122820..118124504-chr5:118126340..118128643,2	K562	blood:
2	chr5:118126334..118128715-chr5:118291929..118293772,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1949100	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2216563	0.88[EUR][1000 genomes]
rs365096	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs374204	0.84[EUR][1000 genomes]
rs413524	0.84[EUR][1000 genomes]
rs421765	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs453422	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs583982	0.95[JPT][hapmap];0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs602886	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs602915	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs623228	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs630247	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs635286	0.95[JPT][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs643819	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs645325	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs655599	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs657948	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs673381	0.80[EUR][1000 genomes]
rs677881	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs682857	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032241	chr5:117900051-118157400	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv882767	chr5:117931730-118385691	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv882768	chr5:118088385-118133786	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	nsv882769	chr5:118088385-118154368	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
5	nsv882770	chr5:118089798-118133786	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
6	nsv599562	chr5:118122504-118230640	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118121800-118127000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr5:118122000-118127200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:118125200-118126600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr5:118125200-118127000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr5:118125200-118127600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr5:118125400-118126800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr5:118125400-118127200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr5:118125600-118127000	Weak transcription	Liver	Liver
9	chr5:118126000-118127600	Enhancers	Fetal Lung	lung
10	chr5:118126400-118126600	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr5:118126400-118127800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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