Variant report

Variant	rs58948556
Chromosome Location	chr1:220977058-220977059
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:220664891..220667719-chr1:220976168..220979061,2	MCF-7	breast:
2	chr1:220454487..220455025-chr1:220976641..220977655,3	K562	blood:
3	chr1:220948312..220949387-chr1:220976677..220977584,4	MCF-7	breast:
4	chr1:220949723..220950745-chr1:220976731..220977609,3	MCF-7	breast:
5	chr1:220959314..220961522-chr1:220976799..220978449,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000186205	Chromatin interaction

rs_ID	r²[population]
rs61195656	0.81[AFR][1000 genomes]

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220961000-220978200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:220961000-220982200	Weak transcription	Brain Substantia Nigra	brain
3	chr1:220961400-220983800	Weak transcription	Esophagus	oesophagus
4	chr1:220961600-220983600	Weak transcription	Pancreas	Pancrea
5	chr1:220961800-220979800	Weak transcription	Right Atrium	heart
6	chr1:220961800-220981400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr1:220961800-220981600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr1:220961800-220983800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr1:220964800-220978400	Weak transcription	Primary B cells from cord blood	blood
10	chr1:220965000-220980000	Weak transcription	Fetal Muscle Leg	muscle
11	chr1:220965200-220979600	Weak transcription	Gastric	stomach
12	chr1:220965200-220985400	Weak transcription	Aorta	Aorta
13	chr1:220965400-220982200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr1:220965600-220983600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr1:220965800-220983800	Weak transcription	Fetal Lung	lung
16	chr1:220966400-220996000	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr1:220966600-220982400	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr1:220966800-220985200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr1:220967600-220983800	Weak transcription	Psoas Muscle	Psoas
20	chr1:220968200-220977200	Strong transcription	Primary neutrophils fromperipheralblood	blood
21	chr1:220969600-220978800	Strong transcription	HepG2	liver
22	chr1:220970400-220981600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr1:220970400-220985800	Weak transcription	Duodenum Mucosa	Duodenum
24	chr1:220970800-220981600	Weak transcription	Brain Hippocampus Middle	brain
25	chr1:220971200-220986400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr1:220971200-220991400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr1:220971600-220980600	Strong transcription	Fetal Intestine Small	intestine
28	chr1:220972200-220983800	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr1:220972200-220984000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr1:220972800-220977800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr1:220972800-220987600	Weak transcription	Fetal Brain Male	brain
32	chr1:220973200-220979800	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr1:220973200-220981800	Weak transcription	Left Ventricle	heart
34	chr1:220973200-220983800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr1:220973200-220991800	Weak transcription	Brain Anterior Caudate	brain
36	chr1:220973400-221000200	Weak transcription	Placenta	Placenta
37	chr1:220973600-220983800	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr1:220973800-220977200	Weak transcription	Stomach Smooth Muscle	stomach
39	chr1:220974000-220992800	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr1:220974200-220978200	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr1:220974200-220986800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr1:220974200-220991200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr1:220974400-220978200	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr1:220975200-220992000	Weak transcription	Brain Germinal Matrix	brain
45	chr1:220975400-220978200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr1:220975400-220978400	Enhancers	Rectal Smooth Muscle	rectum
47	chr1:220975400-220981800	Weak transcription	Right Ventricle	heart
48	chr1:220975600-220977600	Weak transcription	Fetal Intestine Large	intestine
49	chr1:220975600-220978200	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr1:220975600-220978200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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