Variant report

Variant	rs58965805
Chromosome Location	chr4:87686179-87686180
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10049558	1.00[AMR][1000 genomes]
rs11930689	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11940878	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17012052	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv2757071	chr4:87417291-87689533	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	esv2759264	chr4:87417291-87689533	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	nsv830001	chr4:87585278-87748643	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87631200-87712200	Weak transcription	Aorta	Aorta
2	chr4:87635200-87737400	Weak transcription	Fetal Brain Male	brain
3	chr4:87639200-87688000	Weak transcription	Fetal Intestine Large	intestine
4	chr4:87639400-87739200	Weak transcription	A549	lung
5	chr4:87642200-87692600	Weak transcription	NH-A	brain
6	chr4:87642400-87735800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr4:87642600-87692400	Weak transcription	Colon Smooth Muscle	Colon
8	chr4:87642600-87697600	Weak transcription	Brain Angular Gyrus	brain
9	chr4:87642600-87719200	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr4:87655600-87704400	Weak transcription	Hela-S3	cervix
11	chr4:87661600-87710200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr4:87661600-87711400	Weak transcription	Brain Germinal Matrix	brain
13	chr4:87661600-87712000	Weak transcription	Esophagus	oesophagus
14	chr4:87661600-87737800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr4:87661800-87708000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr4:87661800-87712000	Weak transcription	Fetal Intestine Small	intestine
17	chr4:87661800-87728800	Weak transcription	Pancreas	Pancrea
18	chr4:87663000-87711400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr4:87665000-87692400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr4:87669200-87690800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr4:87671800-87713000	Weak transcription	HSMMtube	muscle
22	chr4:87672000-87689000	Weak transcription	Brain Cingulate Gyrus	brain
23	chr4:87672000-87712200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr4:87672800-87690600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr4:87672800-87710000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr4:87672800-87712000	Weak transcription	Lung	lung
27	chr4:87673000-87687400	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr4:87674600-87687600	Weak transcription	Brain Hippocampus Middle	brain
29	chr4:87676200-87699600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr4:87677000-87711400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr4:87677200-87708600	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr4:87678800-87699800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr4:87679000-87712000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr4:87679000-87712400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr4:87679200-87692200	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr4:87679200-87699800	Strong transcription	HUES64 Cell Line	embryonic stem cell
37	chr4:87679400-87695400	Strong transcription	HUES48 Cell Line	embryonic stem cell
38	chr4:87679400-87700200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr4:87679400-87702200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr4:87681000-87692400	Weak transcription	Brain Substantia Nigra	brain
41	chr4:87681000-87710200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr4:87682200-87701800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr4:87683400-87688000	Weak transcription	Fetal Stomach	stomach
44	chr4:87684200-87686600	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr4:87684200-87687600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr4:87684200-87690400	Weak transcription	NHLF	lung
47	chr4:87684200-87698000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr4:87684400-87686400	Weak transcription	Brain Anterior Caudate	brain
49	chr4:87684400-87686600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr4:87684400-87687000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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