Variant report
Variant | rs59008832 |
---|---|
Chromosome Location | chr14:72493933-72493934 |
allele | -/GAGA |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr14:72485047..72487639-chr14:72493810..72496038,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11844223 | 1.00[EUR][1000 genomes] |
rs11844287 | 1.00[EUR][1000 genomes] |
rs11845023 | 1.00[EUR][1000 genomes] |
rs11846804 | 0.92[EUR][1000 genomes] |
rs11846808 | 1.00[EUR][1000 genomes] |
rs11846932 | 1.00[EUR][1000 genomes] |
rs11846989 | 1.00[EUR][1000 genomes] |
rs11847719 | 1.00[EUR][1000 genomes] |
rs11847881 | 1.00[EUR][1000 genomes] |
rs11848888 | 1.00[EUR][1000 genomes] |
rs11849072 | 1.00[EUR][1000 genomes] |
rs11850119 | 1.00[EUR][1000 genomes] |
rs11850239 | 1.00[EUR][1000 genomes] |
rs11851082 | 1.00[EUR][1000 genomes] |
rs11851575 | 1.00[EUR][1000 genomes] |
rs11852228 | 1.00[EUR][1000 genomes] |
rs17768491 | 0.96[EUR][1000 genomes] |
rs2012352 | 1.00[EUR][1000 genomes] |
rs2012354 | 1.00[EUR][1000 genomes] |
rs4262883 | 1.00[EUR][1000 genomes] |
rs4374087 | 1.00[EUR][1000 genomes] |
rs4383069 | 1.00[EUR][1000 genomes] |
rs4899416 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs4899417 | 1.00[EUR][1000 genomes] |
rs4899418 | 1.00[EUR][1000 genomes] |
rs4902980 | 1.00[EUR][1000 genomes] |
rs56098489 | 1.00[EUR][1000 genomes] |
rs56879125 | 1.00[EUR][1000 genomes] |
rs57851285 | 1.00[EUR][1000 genomes] |
rs58117647 | 0.96[EUR][1000 genomes] |
rs60103614 | 0.92[EUR][1000 genomes] |
rs60517172 | 1.00[EUR][1000 genomes] |
rs734424 | 1.00[EUR][1000 genomes] |
rs734425 | 1.00[EUR][1000 genomes] |
rs734426 | 1.00[EUR][1000 genomes] |
rs734427 | 1.00[EUR][1000 genomes] |
rs74060456 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs74060461 | 1.00[EUR][1000 genomes] |
rs74060463 | 1.00[EUR][1000 genomes] |
rs74060464 | 1.00[EUR][1000 genomes] |
rs74063009 | 1.00[EUR][1000 genomes] |
rs74063026 | 1.00[EUR][1000 genomes] |
rs74063030 | 1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv530794 | chr14:72113818-73034008 | Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 8 gene(s) | inside rSNPs | diseases |
2 | nsv948800 | chr14:72462557-73150701 | Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 11 gene(s) | inside rSNPs | diseases |
3 | nsv1053520 | chr14:72485195-72537202 | Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr14:72490000-72494800 | Weak transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
2 | chr14:72493600-72496600 | Strong transcription | Cortex derived primary cultured neurospheres | brain |
3 | chr14:72493600-72497000 | Weak transcription | Left Ventricle | heart |