Variant report

Variant	rs59011605
Chromosome Location	chr6:80758633-80758634
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1079287	1.00[AMR][1000 genomes]
rs57813433	1.00[AMR][1000 genomes]
rs58695989	1.00[AMR][1000 genomes]
rs59035136	0.81[AFR][1000 genomes]
rs59082997	1.00[AMR][1000 genomes]
rs59123316	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61060466	1.00[AMR][1000 genomes]
rs61403430	1.00[AMR][1000 genomes]
rs61648040	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028607	chr6:79853272-80767716	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv886307	chr6:80724666-80765111	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv886308	chr6:80734870-80765111	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80715600-80763800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr6:80721600-80760400	Weak transcription	Fetal Kidney	kidney
3	chr6:80732800-80758800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr6:80732800-80762600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:80734800-80758800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:80740400-80759200	Weak transcription	Fetal Stomach	stomach
7	chr6:80740600-80758800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr6:80742400-80760200	Weak transcription	Fetal Muscle Leg	muscle
9	chr6:80743200-80758800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:80743200-80759400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:80748400-80759200	Weak transcription	Fetal Muscle Trunk	muscle
12	chr6:80751000-80764800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:80751000-80766200	Weak transcription	NHLF	lung
14	chr6:80752800-80763400	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr6:80753200-80765400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr6:80753200-80772200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr6:80753600-80765400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:80753800-80765800	Weak transcription	HSMM	muscle
19	chr6:80757000-80763400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr6:80757200-80758800	Weak transcription	A549	lung
21	chr6:80757200-80758800	Weak transcription	GM12878-XiMat	blood
22	chr6:80757200-80759200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:80757200-80759400	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr6:80757200-80759600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr6:80757200-80760400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:80757200-80760800	Weak transcription	Fetal Thymus	thymus
27	chr6:80757200-80763400	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr6:80757200-80763400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr6:80757400-80763400	Weak transcription	Thymus	Thymus
30	chr6:80757600-80766000	Weak transcription	Dnd41	blood

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