Variant report

Variant	rs59036106
Chromosome Location	chr11:59869325-59869326
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs35033981	1.00[AMR][1000 genomes]
rs59586266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73479087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73479093	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73479095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73483218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73483221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7940080	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7949515	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832173	chr11:59788884-59940560	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv468579	chr11:59814287-59975400	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv555150	chr11:59814287-59975400	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59865400-59870200	Enhancers	HUVEC	blood vessel
2	chr11:59866400-59875200	Weak transcription	Stomach Mucosa	stomach
3	chr11:59868000-59869400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr11:59868600-59869600	Weak transcription	Small Intestine	intestine
5	chr11:59868800-59869400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr11:59869000-59869400	Active TSS	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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