Variant report

Variant	rs59050497
Chromosome Location	chr12:87834249-87834250
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:87828977..87831928-chr12:87832715..87835394,2	MCF-7	breast:
2	chr12:87834051..87835864-chr12:87837793..87840659,2	MCF-7	breast:
3	chr12:87834030..87835899-chr12:87838496..87840072,2	MCF-7	breast:

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs11831047	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11832191	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17014865	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55634446	0.80[EUR][1000 genomes]
rs55668611	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55891301	0.96[EUR][1000 genomes]
rs55943699	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55962892	0.96[EUR][1000 genomes]
rs55996691	1.00[EUR][1000 genomes]
rs56008238	0.96[EUR][1000 genomes]
rs56023642	0.96[EUR][1000 genomes]
rs56206247	0.96[EUR][1000 genomes]
rs56213136	0.96[EUR][1000 genomes]
rs56275058	0.96[EUR][1000 genomes]
rs56285200	0.96[EUR][1000 genomes]
rs56390837	0.96[EUR][1000 genomes]
rs57480049	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60791984	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66862156	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67469634	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67551828	0.96[EUR][1000 genomes]
rs67559359	0.96[EUR][1000 genomes]
rs67770812	0.96[EUR][1000 genomes]
rs67896401	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67914274	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs68045477	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73189250	0.88[EUR][1000 genomes]
rs73189262	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73189270	0.80[EUR][1000 genomes]
rs73189272	0.92[EUR][1000 genomes]
rs73189275	0.88[EUR][1000 genomes]
rs73189277	0.80[EUR][1000 genomes]
rs73189291	0.80[EUR][1000 genomes]
rs73189292	0.80[EUR][1000 genomes]
rs73190009	0.84[EUR][1000 genomes]
rs73190010	0.96[EUR][1000 genomes]
rs73190014	0.96[EUR][1000 genomes]
rs73190016	0.96[EUR][1000 genomes]
rs73190019	0.96[EUR][1000 genomes]
rs73190020	0.96[EUR][1000 genomes]
rs73190021	0.96[EUR][1000 genomes]
rs73190023	0.96[EUR][1000 genomes]
rs73190027	0.84[EUR][1000 genomes]
rs73190028	0.96[EUR][1000 genomes]
rs73190030	0.96[EUR][1000 genomes]
rs73190033	0.96[EUR][1000 genomes]
rs73190036	0.96[EUR][1000 genomes]
rs73190049	0.96[EUR][1000 genomes]
rs73190050	0.96[EUR][1000 genomes]
rs73193409	0.80[EUR][1000 genomes]
rs73193410	0.80[EUR][1000 genomes]
rs73193947	0.96[EUR][1000 genomes]
rs73193953	0.96[EUR][1000 genomes]
rs73193955	0.80[EUR][1000 genomes]
rs73193996	0.96[EUR][1000 genomes]
rs73195712	0.96[EUR][1000 genomes]
rs73195714	0.96[EUR][1000 genomes]
rs73195716	0.96[EUR][1000 genomes]
rs73195720	0.96[EUR][1000 genomes]
rs73195722	0.96[EUR][1000 genomes]
rs73195735	0.96[EUR][1000 genomes]
rs73197650	0.96[EUR][1000 genomes]
rs73197659	0.96[EUR][1000 genomes]
rs73197662	0.96[EUR][1000 genomes]
rs73197664	0.96[EUR][1000 genomes]
rs73197667	0.96[EUR][1000 genomes]
rs73197668	0.96[EUR][1000 genomes]
rs73197669	0.96[EUR][1000 genomes]
rs73197670	0.96[EUR][1000 genomes]
rs73197675	0.96[EUR][1000 genomes]
rs73198265	0.96[EUR][1000 genomes]
rs73201574	1.00[EUR][1000 genomes]
rs73201584	0.88[EUR][1000 genomes]
rs73201588	0.88[EUR][1000 genomes]
rs73203510	0.88[EUR][1000 genomes]
rs73203516	0.88[EUR][1000 genomes]
rs73203525	0.88[EUR][1000 genomes]
rs73409380	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430523	chr12:87757132-87865832	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv430525	chr12:87757132-87905532	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv559701	chr12:87801947-87905878	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3350469	chr12:87802235-87844904	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:87832800-87834400	Enhancers	Stomach Mucosa	stomach
2	chr12:87833000-87834400	Enhancers	Fetal Intestine Small	intestine
3	chr12:87833000-87834600	Enhancers	HUVEC	blood vessel
4	chr12:87833000-87835000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr12:87833000-87835200	Enhancers	Hela-S3	cervix
6	chr12:87833200-87834600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr12:87833200-87835000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr12:87833200-87835000	Enhancers	Fetal Intestine Large	intestine
9	chr12:87833200-87835200	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr12:87833200-87835200	Enhancers	NHEK	skin
11	chr12:87833200-87835400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr12:87833200-87835600	Enhancers	HMEC	breast
13	chr12:87833200-87835800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr12:87833400-87834400	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr12:87833400-87834800	Enhancers	Muscle Satellite Cultured Cells	--
16	chr12:87833400-87835000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr12:87833400-87835000	Enhancers	HSMM	muscle
18	chr12:87833400-87835400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr12:87833600-87834400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr12:87833600-87834400	Enhancers	Duodenum Mucosa	Duodenum
21	chr12:87833600-87834400	Enhancers	NHLF	lung
22	chr12:87833600-87834600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr12:87833600-87834600	Enhancers	NH-A	brain
24	chr12:87833600-87834600	Enhancers	Osteobl	bone
25	chr12:87833600-87835000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr12:87833600-87835000	Enhancers	HSMMtube	muscle
27	chr12:87834000-87834400	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr12:87834200-87834600	Flanking Active TSS	A549	lung
29	chr12:87834200-87835000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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