Variant report

Variant	rs59052115
Chromosome Location	chr11:70875924-70875925
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:70873742..70875932-chr11:70916305..70918922,2	MCF-7	breast:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10897725	0.85[EUR][1000 genomes]
rs10897726	0.85[EUR][1000 genomes]
rs11232300	0.81[EUR][1000 genomes]
rs11232301	0.82[EUR][1000 genomes]
rs11232304	0.82[EUR][1000 genomes]
rs11232305	0.81[EUR][1000 genomes]
rs12271307	0.84[EUR][1000 genomes]
rs12272223	0.86[EUR][1000 genomes]
rs12273513	0.82[EUR][1000 genomes]
rs12273863	0.82[EUR][1000 genomes]
rs12274896	0.83[EUR][1000 genomes]
rs12282822	0.84[EUR][1000 genomes]
rs12289383	0.82[EUR][1000 genomes]
rs17431746	0.80[EUR][1000 genomes]
rs28811899	0.93[EUR][1000 genomes]
rs28876818	0.94[EUR][1000 genomes]
rs34402475	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35136877	0.88[EUR][1000 genomes]
rs35467939	0.81[ASN][1000 genomes]
rs4245462	0.86[EUR][1000 genomes]
rs4304805	0.85[EUR][1000 genomes]
rs4334036	0.86[EUR][1000 genomes]
rs4348928	0.94[EUR][1000 genomes]
rs4944245	0.85[EUR][1000 genomes]
rs55664123	0.86[EUR][1000 genomes]
rs55726773	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55988920	0.86[EUR][1000 genomes]
rs56035448	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56144630	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56181437	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56291131	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56341503	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56393668	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58093994	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs60079515	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60524701	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61582992	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66521164	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7116150	0.94[EUR][1000 genomes]
rs7123898	0.84[EUR][1000 genomes]
rs7125114	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72957115	0.93[EUR][1000 genomes]
rs72957676	0.81[EUR][1000 genomes]
rs72957677	0.81[EUR][1000 genomes]
rs72957679	0.81[EUR][1000 genomes]
rs72957686	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72957688	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72957690	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72957699	0.87[AMR][1000 genomes]
rs72959503	0.82[EUR][1000 genomes]
rs72959507	0.85[EUR][1000 genomes]
rs72959509	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72959517	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72959521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72959524	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7931474	0.91[EUR][1000 genomes]
rs7932968	0.84[EUR][1000 genomes]
rs7933912	0.84[EUR][1000 genomes]
rs7945968	0.86[EUR][1000 genomes]
rs7949824	0.84[EUR][1000 genomes]
rs7950101	0.84[EUR][1000 genomes]
rs9888294	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70858200-70891000	Weak transcription	Gastric	stomach
2	chr11:70864600-70886000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr11:70865400-70880000	Weak transcription	A549	lung
4	chr11:70865600-70876400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:70865600-70876800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr11:70865600-70882400	Weak transcription	Placenta	Placenta
7	chr11:70865600-70885800	Weak transcription	Pancreas	Pancrea
8	chr11:70865800-70876400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:70866400-70881800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr11:70867200-70876600	Weak transcription	Fetal Intestine Large	intestine
11	chr11:70867600-70881600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:70867800-70876400	Weak transcription	HepG2	liver
13	chr11:70870400-70876800	Weak transcription	Liver	Liver
14	chr11:70871600-70883200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr11:70872200-70886000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr11:70873400-70876400	Weak transcription	Fetal Intestine Small	intestine
17	chr11:70874800-70880000	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr11:70875000-70885800	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr11:70875800-70876000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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