Variant report

Variant	rs59053313
Chromosome Location	chr5:97733291-97733292
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11959445	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17165940	0.91[AFR][1000 genomes]
rs73143820	0.91[AFR][1000 genomes]
rs73143823	0.91[AFR][1000 genomes]
rs73143829	0.91[AFR][1000 genomes]
rs73143830	0.88[AFR][1000 genomes]
rs73143840	0.91[AFR][1000 genomes]
rs73143852	0.91[AFR][1000 genomes]
rs73159269	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882407	chr5:97553255-97783046	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv882408	chr5:97616089-97836794	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv830419	chr5:97653713-97829079	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv4928	chr5:97689980-97734899	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1018555	chr5:97719032-97873906	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97721400-97733600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr5:97728200-97734400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:97732600-97733800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr5:97732600-97734600	Enhancers	NHDF-Ad	bronchial
5	chr5:97732600-97735000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:97732800-97733400	Enhancers	Osteobl	bone
7	chr5:97733000-97734600	Enhancers	Brain Cingulate Gyrus	brain
8	chr5:97733200-97735200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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