Variant report

Variant	rs59065645
Chromosome Location	chr1:168324021-168324022
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12085802	0.82[EUR][1000 genomes]
rs12089215	0.83[EUR][1000 genomes]
rs61521307	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6659763	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72701770	0.91[EUR][1000 genomes]
rs72701772	0.91[EUR][1000 genomes]
rs72701777	0.91[EUR][1000 genomes]
rs7535315	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831825	chr1:168179175-168353062	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1002007	chr1:168179463-168375973	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168318400-168324200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:168318400-168324200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr1:168318400-168329200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr1:168318400-168329400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr1:168318400-168329400	Weak transcription	Colon Smooth Muscle	Colon
6	chr1:168323600-168325400	Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr1:168323800-168324600	Active TSS	H9 Cell Line	embryonic stem cell
8	chr1:168323800-168324800	Active TSS	HUES64 Cell Line	embryonic stem cell
9	chr1:168323800-168325400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
10	chr1:168323800-168325600	Active TSS	ES-I3 Cell Line	embryonic stem cell
11	chr1:168324000-168324200	Active TSS	HepG2	liver
12	chr1:168324000-168324400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr1:168324000-168324600	Active TSS	iPS-15b Cell Line	embryonic stem cell
14	chr1:168324000-168324800	Active TSS	Placenta	Placenta
15	chr1:168324000-168325200	Active TSS	H1 Cell Line	embryonic stem cell
16	chr1:168324000-168325400	Active TSS	iPS-18 Cell Line	embryonic stem cell
17	chr1:168324000-168325600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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