Variant report

Variant	rs59090256
Chromosome Location	chr11:32460882-32460883
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:6)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:4)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:6 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:32458391-32461056	H1-neurons	neurons:	n/a	n/a
2	SUZ12	chr11:32453725-32461544	NT2-D1	testis:	n/a	n/a
3	FOXA1	chr11:32460508-32460899	T-47D	breast:	n/a	n/a
4	POLR2A	chr11:32458208-32461069	H1-neurons	neurons:	n/a	n/a
5	SUZ12	chr11:32459091-32461237	H1-hESC	embryonic stem cell:	n/a	n/a
6	POLR2A	chr11:32459318-32464847	K562	blood:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:32460248..32463699-chr11:32486018..32490383,4	K562	blood:

(count:4 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-EIF3M-2	chr11:32459475-32461618	ENSG00000183242
2	lnc-EIF3M-2	chr11:32459391-32462950	ENSG00000183242
3	lnc-EIF3M-2	chr11:32459391-32461618	NONHSAT018663
4	lnc-EIF3M-2	chr11:32459391-32461620	NR_023920

No data

Variant related genes	Relation type
WT1	TF binding region

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11031782	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2234583	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34250829	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34712216	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs36106678	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs5030121	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5030158	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6508	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105964	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832108	chr11:32395937-32560583	Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1044547	chr11:32435753-32465233	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2753303	chr11:32447324-32494924	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1051559	chr11:32447347-32465233	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32457000-32462600	Bivalent/Poised TSS	Fetal Kidney	kidney
2	chr11:32457200-32461000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
3	chr11:32458600-32461200	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
4	chr11:32458600-32461200	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
5	chr11:32459200-32461000	Bivalent Enhancer	Primary B cells from peripheral blood	blood
6	chr11:32459200-32461200	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
7	chr11:32459400-32461000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
8	chr11:32459400-32461000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
9	chr11:32459600-32461000	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:32459600-32461000	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
11	chr11:32459600-32461000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
12	chr11:32459600-32461000	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
13	chr11:32459600-32461000	Bivalent Enhancer	Brain Dorsolateral Prefrontal Cortex	brain
14	chr11:32459600-32461000	Enhancers	Gastric	stomach
15	chr11:32459600-32461000	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
16	chr11:32459600-32461200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr11:32459600-32461200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
18	chr11:32459600-32461200	Bivalent Enhancer	Adipose Nuclei	Adipose
19	chr11:32459800-32461000	Bivalent Enhancer	Fetal Heart	heart
20	chr11:32459800-32461400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
21	chr11:32460000-32461000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
22	chr11:32460000-32461000	Bivalent Enhancer	Primary B cells from cord blood	blood
23	chr11:32460200-32461000	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr11:32460200-32461000	Bivalent Enhancer	Liver	Liver
25	chr11:32460200-32461200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
26	chr11:32460200-32461600	Active TSS	Ovary	ovary
27	chr11:32460400-32461000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
28	chr11:32460400-32461000	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
29	chr11:32460400-32461000	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
30	chr11:32460400-32461000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr11:32460400-32461000	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
32	chr11:32460400-32461000	Enhancers	Pancreas	Pancrea
33	chr11:32460400-32461200	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr11:32460600-32461000	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr11:32460600-32461000	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr11:32460600-32461000	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr11:32460600-32461000	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr11:32460600-32461000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr11:32460600-32461000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr11:32460600-32461000	Bivalent Enhancer	Fetal Lung	lung
41	chr11:32460600-32461000	Bivalent Enhancer	Placenta	Placenta
42	chr11:32460600-32461000	Active TSS	Right Atrium	heart
43	chr11:32460600-32461000	Flanking Active TSS	Right Ventricle	heart
44	chr11:32460600-32461000	Enhancers	Spleen	Spleen
45	chr11:32460600-32461200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
46	chr11:32460600-32461200	Bivalent Enhancer	Fetal Brain Male	brain
47	chr11:32460600-32461200	Bivalent Enhancer	Fetal Stomach	stomach
48	chr11:32460800-32461000	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr11:32460800-32461000	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
50	chr11:32460800-32461000	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell

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