Variant report

Variant	rs59098547
Chromosome Location	chr10:52859778-52859779
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:52855387..52858289-chr10:52859088..52861078,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10218858	0.85[EUR][1000 genomes]
rs10995547	0.85[EUR][1000 genomes]
rs12573698	0.96[EUR][1000 genomes]
rs16913603	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16913709	0.96[EUR][1000 genomes]
rs2339676	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2339677	0.96[EUR][1000 genomes]
rs2879546	0.85[EUR][1000 genomes]
rs2879548	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4542348	0.85[EUR][1000 genomes]
rs5011544	0.85[EUR][1000 genomes]
rs58268608	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58296033	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73322683	1.00[EUR][1000 genomes]
rs73323803	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73333876	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73333902	1.00[ASN][1000 genomes]
rs73338483	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73338488	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73338490	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73338492	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73338494	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73338499	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73338502	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73340468	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73340469	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73340484	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7476372	0.85[EUR][1000 genomes]
rs7476747	0.85[EUR][1000 genomes]
rs9414804	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831873	chr10:52710610-52899540	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv895394	chr10:52793177-52866503	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
4	nsv825378	chr10:52855771-52908439	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52844000-52877200	Weak transcription	Fetal Stomach	stomach
2	chr10:52850200-52863400	Weak transcription	NHLF	lung
3	chr10:52853000-52871200	Weak transcription	Fetal Muscle Leg	muscle
4	chr10:52853200-52860000	Weak transcription	Fetal Lung	lung
5	chr10:52855200-52866200	Weak transcription	Psoas Muscle	Psoas
6	chr10:52856400-52861800	Weak transcription	Right Atrium	heart
7	chr10:52856600-52877200	Weak transcription	Colon Smooth Muscle	Colon
8	chr10:52857600-52877200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr10:52858200-52860200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:52858800-52866200	Weak transcription	Left Ventricle	heart
11	chr10:52858800-52873000	Weak transcription	Aorta	Aorta
12	chr10:52859400-52863400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr10:52859600-52863200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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