Variant report

Variant	rs5912198
Chromosome Location	chrX:78215601-78215602
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2742206	1.00[ASW][hapmap];0.87[CHB][hapmap];0.84[CHD][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.85[TSI][hapmap]
rs5959211	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs5959237	0.83[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3394349	chrX:77977388-78779139	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:78205400-78216000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chrX:78205600-78216200	Weak transcription	Primary hematopoietic stem cells	blood
3	chrX:78206400-78217200	Genic enhancers	Primary B cells from peripheral blood	blood
4	chrX:78212800-78216200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chrX:78213000-78215800	Enhancers	Dnd41	blood
6	chrX:78213200-78219800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chrX:78214600-78218200	Strong transcription	Primary T cells fromperipheralblood	blood
8	chrX:78214800-78216000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chrX:78214800-78216200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chrX:78214800-78216400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chrX:78214800-78216400	Weak transcription	Fetal Thymus	thymus
12	chrX:78214800-78218400	ZNF genes & repeats	GM12878-XiMat	blood
13	chrX:78215000-78216000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chrX:78215000-78216400	Weak transcription	Primary T cells from cord blood	blood
15	chrX:78215000-78219000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chrX:78215200-78216000	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chrX:78215400-78215800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chrX:78215400-78217800	Weak transcription	Spleen	Spleen
19	chrX:78215600-78216200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chrX:78215600-78217000	Strong transcription	Primary B cells from cord blood	blood
21	chrX:78215600-78217200	Strong transcription	Primary T helper cells PMA-I stimulated	--
22	chrX:78215600-78217800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chrX:78215600-78218000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chrX:78215600-78218000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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